Topics tagged otus

Topic	Replies	Views	Activity
Fetures ID to OTU Technical Support otus	2	1210	December 10, 2019
barplot from de-novo OTUs: ValueError: Feature IDs found in the table are missing from the taxonomy User Support otus , barplot , taxonomy	23	1629	November 22, 2019
ASVs versus OTUs, is conversion possible General Discussion otus , asv	1	1768	August 23, 2019
Re-obtaining rep-seqs and feature tables after filtering for barcoding User Support otus , taxonomy , filtering , dada2	6	3528	August 15, 2019
Fix required: Tips in a tree detected as repeated User Support otus , closed-reference , tree , sepp , core-metrics	6	647	July 27, 2019
uneven taxonomy and OTU table length after filtering Technical Support otus , merge , taxonomy	3	1003	June 21, 2019
Create Graphlan input files from OTU table Other Bioinformatics Tools otus	2	992	July 19, 2019
Assessing only taxonomic diversity for each sample? General Discussion otus , diversity , power	4	607	June 27, 2019
OTU clustering using ASV table User Support otus , asv	4	1525	June 17, 2019
Use of rarefacted Table General Discussion rarefaction , otus , normalization	3	2836	May 15, 2019
fasta file analysis in QIIME2 User Support fasta , chimera , otus , dada2	10	4299	June 10, 2019
Qiime2r - invalid “phyloseq” object: Component sample names do not match Community Plugin Support otus , qiime2-r , taxonomy , metadata	6	9787	May 10, 2019
What is the simplest way of working out how many representative sequences exist in each sample of a QIIME2 experiment? User Support otus	6	1086	April 12, 2019
Getting a bit lost in the workflow - post deblur User Support deblur , otus	3	973	February 9, 2019
Diversity analysis with OTU table text file User Support moving-pictures , silva , otus , diversity	3	2369	January 13, 2019
Closed-reference otu picking from fastq file? User Support fastq , otus , vsearch , taxonomy , import	4	684	September 14, 2018
Create OTU table from table.qza & taxonomy.qza User Support export , otus	18	6958	September 7, 2018
Denoising vs OTU picking methods User Support otus , asv , dada2	8	2474	September 3, 2018
What are the differences between two OTU tables User Support otus	4	676	August 12, 2018
Importing FASTA sequences for OTU picking/taxonomy assigning User Support otus , taxonomy , import	13	3068	August 7, 2018
Otu_map.txt in QIIME2 User Support otus , otu-map , metadata , taxonomy , dada2 , pending-development	4	1025	August 5, 2018
Convert denoising OTUID into genbank accession number User Support otus , silva , taxonomy , dada2	5	734	June 28, 2018
When to use OTU clustering User Support otus	2	875	June 15, 2018
Subsampled open reference OTU clustering User Support otus	8	2041	May 18, 2018
How to add taxonomy to feature-table.qza and get otu id of each taxonomy and number of otus User Support otus , taxonomy	26	15688	April 28, 2018
What is the reason why there are multiple OTU identifiers in the same species? - Taxonomy assignments in QIIME User Support otus	5	1913	April 5, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support otus , greengenes	2	1353	March 26, 2018
Clustering sequences into OTUs using q2-vsearch Tutorials otus , vsearch , tutorial	1	16398	May 1, 2018
Low level taxonomic assignment when using open-reference clustering User Support otus , taxonomy , vsearch , feature-classifier	4	1679	March 12, 2018
Questions about Open Reference OTU Picking User Support otus	8	4238	March 10, 2018