Topics tagged greengenes

Topic	Replies	Views	Activity
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	66	16617	April 23, 2024
train a greengenes 2022 classifier for forward reads only Technical Support feature-classifier , greengenes	5	215	January 7, 2024
How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022?? Community Plugin Support feature-classifier , taxonomy , greengenes	4	689	October 23, 2023
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	4	316	April 30, 2023
Alternative methods to download Greengenes 16S rRNA 13_8? Technical Support greengenes	2	551	March 23, 2023
Pre-trained Classifier of V3-V4 region with gg-99 (scikit-learn (0.24.1)) Community Contributions feature-classifier , greengenes , v3v4	0	920	February 23, 2022
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	4	402	August 23, 2021
What's the difference between ;__ and ;g__ in Greengene database? User Support greengenes	3	2127	January 4, 2021
Resources for using classify-consensus-blast on 16S data User Support feature-classifier , taxonomy , greengenes , silva	4	1331	August 8, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? General Discussion taxonomy , greengenes , silva	8	2733	March 6, 2020
Greengenes Versus Silva General Discussion greengenes , silva	3	2459	January 29, 2020
Importing 13_8 Greengenes database for training classifier User Support import , feature-classifier , greengenes	2	1935	November 22, 2019
Qiime2 2018.4 and 2018.11 greengene User Support greengenes	4	2135	January 4, 2019
Finding the right greengenes files for training a classifier User Support feature-classifier , greengenes	4	3941	August 25, 2018
Greengenes Tree Download With Branch Lengths User Support taxonomy , greengenes	5	1863	April 7, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support greengenes , otus	2	1353	March 26, 2018
Loading Greengenes tree in iTOL User Support greengenes , tree , itol	11	6293	March 17, 2018
How to map SILVA and GG 13_8 ids to NCBI or IMG ids? User Support greengenes , silva	5	2149	March 8, 2018
Combine different reference sequences databases User Support feature-classifier , taxonomy , greengenes , silva , unite	2	1789	March 6, 2018
Feature-classifier error during training User Support feature-classifier , taxonomy , greengenes	9	1927	February 22, 2018
SILVA vs Greengenes User Support greengenes , silva	2	2337	February 3, 2018
What is the difference between Greengenes and SILVA? User Support greengenes , silva	5	12054	November 27, 2017
Classifier Training Questions User Support feature-classifier , taxonomy , greengenes	3	3805	October 8, 2017
Training new feature classifier User Support feature-classifier , taxonomy , greengenes , silva	5	3088	September 23, 2017
Can't import Greengenes taxonomy User Support import , taxonomy , greengenes	3	1053	September 18, 2017
Database used in QIIME2 User Support taxonomy , greengenes	2	1560	September 17, 2017