Topics tagged greengenes

Topic	Replies	Views	Activity
Difficulty assigning taxonomy to cyanobacterial ASVs General Discussion taxonomy , greengenes , silva , ncbi	2	47	June 5, 2025
Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases General Discussion feature-classifier , greengenes , silva	7	103	March 16, 2025
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	83	27253	January 9, 2025
gg-13-8-99-515-806-nb-classifier.qza is not up-to-date Technical Support feature-classifier , greengenes , greengenes2	9	212	January 13, 2025
Best Discussion Forum for Greengenes 2? General Discussion greengenes , ribosomal-database , greengenes2	7	159	August 28, 2024
Database With Best Accuracy at Genus Level for Human Microbiome? General Discussion greengenes , ncbi , rdp , greengenes2	8	209	August 28, 2024
Reconciling 16s Databases in a Single Pipeline General Discussion greengenes , silva , 16s , ncbi , rdp	5	139	August 28, 2024
How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022?? Library Plugin Support feature-classifier , taxonomy , greengenes	9	1284	June 20, 2024
train a greengenes 2022 classifier for forward reads only Technical Support feature-classifier , greengenes	5	360	January 7, 2024
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	4	373	April 30, 2023
Alternative methods to download Greengenes 16S rRNA 13_8? Technical Support greengenes	2	1033	March 23, 2023
Pre-trained Classifier of V3-V4 region with gg-99 (scikit-learn (0.24.1)) Community Contributions feature-classifier , greengenes , v3v4	0	1062	February 23, 2022
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	4	451	August 23, 2021
What's the difference between ;__ and ;g__ in Greengene database? User Support greengenes	3	2318	January 4, 2021
Resources for using classify-consensus-blast on 16S data User Support feature-classifier , taxonomy , greengenes , silva	4	1508	August 8, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? General Discussion taxonomy , greengenes , silva	8	2949	March 6, 2020
Greengenes Versus Silva General Discussion greengenes , silva	3	2707	January 29, 2020
Importing 13_8 Greengenes database for training classifier User Support import , feature-classifier , greengenes	2	2076	November 22, 2019
Qiime2 2018.4 and 2018.11 greengene User Support greengenes	4	2221	January 4, 2019
Finding the right greengenes files for training a classifier User Support feature-classifier , greengenes	4	4170	August 25, 2018
Greengenes Tree Download With Branch Lengths User Support taxonomy , greengenes	5	1972	April 7, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support greengenes , otus	2	1414	March 26, 2018
Loading Greengenes tree in iTOL User Support greengenes , tree , itol	11	6712	March 17, 2018
How to map SILVA and GG 13_8 ids to NCBI or IMG ids? User Support greengenes , silva	5	2349	March 8, 2018
Combine different reference sequences databases User Support feature-classifier , taxonomy , greengenes , silva , unite	2	1932	March 6, 2018
Feature-classifier error during training User Support feature-classifier , taxonomy , greengenes	9	2041	February 22, 2018
SILVA vs Greengenes User Support greengenes , silva	2	2398	February 3, 2018
What is the difference between Greengenes and SILVA? User Support greengenes , silva	5	13332	November 27, 2017
Classifier Training Questions User Support feature-classifier , taxonomy , greengenes	3	3916	October 8, 2017
Training new feature classifier User Support feature-classifier , taxonomy , greengenes , silva	5	3261	September 23, 2017