Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases
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7
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66
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March 16, 2025
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Introducing Greengenes2 2022.10
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83
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26052
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January 9, 2025
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gg-13-8-99-515-806-nb-classifier.qza is not up-to-date
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9
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159
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January 13, 2025
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Best Discussion Forum for Greengenes 2?
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7
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152
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August 28, 2024
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Database With Best Accuracy at Genus Level for Human Microbiome?
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8
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189
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August 28, 2024
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Reconciling 16s Databases in a Single Pipeline
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5
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114
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August 28, 2024
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How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022??
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9
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1242
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June 20, 2024
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train a greengenes 2022 classifier for forward reads only
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5
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355
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January 7, 2024
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issues moving between greengenes classification and diversity metrics
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4
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371
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April 30, 2023
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Alternative methods to download Greengenes 16S rRNA 13_8?
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2
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990
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March 23, 2023
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Pre-trained Classifier of V3-V4 region with gg-99 (scikit-learn (0.24.1))
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0
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1062
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February 23, 2022
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Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny
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4
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449
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August 23, 2021
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What's the difference between ;__ and ;g__ in Greengene database?
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3
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2311
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January 4, 2021
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Resources for using classify-consensus-blast on 16S data
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4
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1497
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August 8, 2020
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Why does Greengenes assign more features at the class and order ranks than Silva?
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8
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2934
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March 6, 2020
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Greengenes Versus Silva
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3
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2699
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January 29, 2020
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Importing 13_8 Greengenes database for training classifier
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2
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2070
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November 22, 2019
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Qiime2 2018.4 and 2018.11 greengene
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4
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2220
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January 4, 2019
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Finding the right greengenes files for training a classifier
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4
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4159
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August 25, 2018
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Greengenes Tree Download With Branch Lengths
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5
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1970
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April 7, 2018
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I want to change my OTU id into gg_13_8 OTU ID
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2
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1414
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March 26, 2018
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Loading Greengenes tree in iTOL
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11
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6687
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March 17, 2018
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How to map SILVA and GG 13_8 ids to NCBI or IMG ids?
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5
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2334
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March 8, 2018
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Combine different reference sequences databases
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2
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1925
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March 6, 2018
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Feature-classifier error during training
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9
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2041
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February 22, 2018
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SILVA vs Greengenes
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2
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2398
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February 3, 2018
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What is the difference between Greengenes and SILVA?
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5
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13233
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November 27, 2017
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Classifier Training Questions
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3
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3911
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October 8, 2017
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Training new feature classifier
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5
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3251
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September 23, 2017
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Can't import Greengenes taxonomy
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3
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1100
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September 18, 2017
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