Topics tagged greengenes

Topic	Replies	Views	Activity
Best Discussion Forum for GreenGenes 2? General Discussion greengenes , ribosomal-database , greengenes2	1	35	July 17, 2024
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	71	20057	June 25, 2024
How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022?? Community Plugin Support feature-classifier , taxonomy , greengenes	9	957	June 20, 2024
train a greengenes 2022 classifier for forward reads only Technical Support feature-classifier , greengenes	5	311	January 7, 2024
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	4	364	April 30, 2023
Alternative methods to download Greengenes 16S rRNA 13_8? Technical Support greengenes	2	704	March 23, 2023
Pre-trained Classifier of V3-V4 region with gg-99 (scikit-learn (0.24.1)) Community Contributions feature-classifier , greengenes , v3v4	0	1032	February 23, 2022
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	4	445	August 23, 2021
What's the difference between ;__ and ;g__ in Greengene database? User Support greengenes	3	2257	January 4, 2021
Resources for using classify-consensus-blast on 16S data User Support feature-classifier , taxonomy , greengenes , silva	4	1462	August 8, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? General Discussion taxonomy , greengenes , silva	8	2865	March 6, 2020
Greengenes Versus Silva General Discussion greengenes , silva	3	2605	January 29, 2020
Importing 13_8 Greengenes database for training classifier User Support import , feature-classifier , greengenes	2	2002	November 22, 2019
Qiime2 2018.4 and 2018.11 greengene User Support greengenes	4	2215	January 4, 2019
Finding the right greengenes files for training a classifier User Support feature-classifier , greengenes	4	4069	August 25, 2018
Greengenes Tree Download With Branch Lengths User Support taxonomy , greengenes	5	1954	April 7, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support greengenes , otus	2	1410	March 26, 2018
Loading Greengenes tree in iTOL User Support greengenes , tree , itol	11	6561	March 17, 2018
How to map SILVA and GG 13_8 ids to NCBI or IMG ids? User Support greengenes , silva	5	2260	March 8, 2018
Combine different reference sequences databases User Support feature-classifier , taxonomy , greengenes , silva , unite	2	1882	March 6, 2018
Feature-classifier error during training User Support feature-classifier , taxonomy , greengenes	9	2030	February 22, 2018
SILVA vs Greengenes User Support greengenes , silva	2	2394	February 3, 2018
What is the difference between Greengenes and SILVA? User Support greengenes , silva	5	12571	November 27, 2017
Classifier Training Questions User Support feature-classifier , taxonomy , greengenes	3	3902	October 8, 2017
Training new feature classifier User Support feature-classifier , taxonomy , greengenes , silva	5	3195	September 23, 2017
Can't import Greengenes taxonomy User Support import , taxonomy , greengenes	3	1093	September 18, 2017
Database used in QIIME2 User Support taxonomy , greengenes	2	1587	September 17, 2017