Topics tagged phylogeny

Topic	Replies	Views	Activity
how to phylogenetically analyse 16S genes recovered from metagenome? General Discussion taxonomy , phylogeny	2	44	March 3, 2025
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	83	25627	January 9, 2025
Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty. User Support phylogeny , filter-features	3	28	August 15, 2024
Phylogeny error Technical Support phylogeny	5	84	July 26, 2024
Core-metrics (Plugin error from diversity) Technical Support phylogeny , core-metrics , alpha	11	578	April 1, 2024
Error occured while running for MAFFT in qiime2 Technical Support phylogeny , tree	12	218	March 24, 2024
ASVs of the same genus in different branches on the phylogenetic tree User Support taxonomy , phylogeny , tree	3	189	March 21, 2024
qiime vsearch cluster-features-open-reference issue User Support feature-table , phylogeny , vsearch , qiime2	20	412	March 18, 2024
Generating phylogenic tree for diversity analyses User Support phylogeny	5	201	December 21, 2023
Greengenes2 feature in table not found in tree during beta-rarefaction Technical Support taxonomy , phylogeny , unifrac	7	517	October 6, 2023
Visualizing phylogenetic trees General Discussion phylogeny	2	1081	May 15, 2023
plugin error from phylogeny - no such file or directory: mafft Technical Support mafft , phylogeny	5	676	June 10, 2023
UniFrac and Phylogenetic Methods with Full-length 16S-ITS-23S Sequences General Discussion phylogeny , unifrac	3	973	March 29, 2023
q2-phylogeny mafft job "killed" User Support phylogeny	11	846	March 24, 2023
Phylogenetic tree tools User Support phylogeny	11	1546	March 13, 2023
plugin error from phylogeny raxml (default): returned non-zero exit status 255 Technical Support phylogeny , raxml	7	1046	February 4, 2023
Make phylogenetic tree based on sequence User Support dada2 , phylogeny	5	1193	January 5, 2023
Qiime 2 version of Qiime1 "pick_rep_set.py" for picking representative OTU sequences Technical Support taxonomy , phylogeny , otus	4	369	December 23, 2022
Converting file from .tre to .nwk? Other Bioinformatics Tools dada2 , taxonomy , phylogeny	5	2445	September 28, 2022
q2-phylogeny for vertebrates User Support phylogeny , fragment-insertion	5	824	September 25, 2022
Phylogenetic analysis of Nanopore 16S reads. How many subsampled reads will do? User Support phylogeny , nanopore	8	1199	August 31, 2022
Plugin error from phylogeny qiime2-2022.2 Technical Support phylogeny	2	833	August 29, 2022
Plugin error from diversity to get alpha and beta diversity Technical Support phylogeny , core-metrics , alpha	5	922	August 22, 2022
Bulding a phylogeny using taxonomy User Support taxonomy , phylogeny	6	864	April 29, 2022
qiime phylogeny General Discussion phylogeny	2	696	April 28, 2022
Changing tip labels on rooted-tree.qza from sequence identifiers to SILVA taxa annotations using R Other Bioinformatics Tools taxonomy , phylogeny	10	2078	March 23, 2022
PD Mouse tutorial error in generating phylogenetic tree Technical Support phylogeny	12	620	January 22, 2022
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	4	448	August 23, 2021
Querying QIIME's plugins generally, and for making phylogenies specifically General Discussion phylogeny	2	541	June 15, 2021
Hierarchy output of gneiis ilr-phylogenetic User Support gneiss , phylogeny	3	429	May 28, 2021