Community Contributions

Translations This category contains translations of the QIIME 2 documentation in different languages, developed and contributed by members of the QIIME 2 user community. The translated documentation should be considered supplemental to the primary documentation at https://docs.qiime2.org. If the translated documentation is popular, we may eventually work towards including it at https://docs.qiime2.org. Plugins The Community Plugins category is for sharing QIIME 2 plugins that are not part of a QIIME 2 Distribution. Tutorials The Community Tutorials category is for sharing QIIME 2 tutorials that are not part of the official QIIME 2 documentation. These may be contributed by members of the QIIME 2 user community, or by plugin developers who are drafting new tutorials that may ultimately be included in the QIIME 2 documentation. Data resources The Community Data Resources category is for sharing QIIME 2 resources, such as trained feature classifiers or reference databases, that are not listed on the QIIME 2 Data Resources page. These may be contributed by members of the QIIME 2 developer or user community, or by QIIME 2 developers who are not ready to include their resource on the QIIME 2 Data Resources page yet.

Topic	Replies	Views	Activity
About the Community Contributions category Community Contributions	0	1112	February 14, 2018
AMF Bioinformatics Resources and Workflows: Summary and Community Contribution Data resources fungi , tutorial , taxonomy	0	4	November 5, 2026
Visualizing and Examining AMF Taxonomic Assignment Results in QIIME 2 Tutorials fungi , tutorial , taxonomy	0	4	November 5, 2026
Application of an AMF Bioinformatics Pipeline Across Five Datasets Using QIIME 2, VSEARCH and MaarjAM Tutorials feature-classifier , dada2 , taxonomy	0	12	November 4, 2026
Applying a MaarjAM-Based Naive Bayes Classifier for AMF Taxonomic Assignment Using QIIME 2 Tutorials feature-classifier , fungi , taxonomy	0	10	November 4, 2026
Training and Sharing a MaarjAM-Based Naive Bayes Classifier for AMF Taxonomic Classification in QIIME 2 Data resources feature-classifier , taxonomy , dada2	0	16	November 3, 2026
Screening Candidate AMF Sequences Using QIIME 2 and VSEARCH: AMV45/AMDGR Mock-Community Workflow Tutorials taxonomy , dada2 , fungi	0	17	November 3, 2026
AMF Sequencing Datasets and Mock Community Resources: An Introduction to a QIIME 2 Collection Data resources taxonomy , mock-communities , fungi	0	22	November 2, 2026
q2-fungal-traits: a QIIME 2 plugin for trait-based analysis of fungal microbiome data Plugins	4	170	October 20, 2026
Decontam functionality within QIIME2 Tutorials Tutorials decontam , queued	9	894	October 13, 2026
using multiple taxonomy classifiers, for comparison or in filtering workflows Tutorials	0	94	October 9, 2026
pre-trained UNITE ITS classifiers for QIIME 2026.10 and scikit-learn=1.7.1 Data resources feature-classifier , unite , taxonomy , fungi , its	15	9604	August 31, 2026
biom-viewer: a fast native macOS viewer for QIIME 2's .biom output Community Contributions	0	44	August 31, 2026
Using RESCRIPt's 'extract-seq-segments' to extract reference sequences without PCR primer pairs. Tutorials its , trnl , co1 , ssu , lsu , rescript , taxonomy , tutorial , feature-classifier	5	6846	November 14, 2023
Train a taxonomy classifier by extracting an amplicon region from a curated sequence alignment (using SILVA as an example). Tutorials feature-classifier , silva , taxonomy , rescript , alignment , tutorial	0	150	August 12, 2026
RESCRIPt-evaluate Plugins feature-classifier , taxonomy , rescript , rescript-evaluate	0	114	July 27, 2026
GTDB r232 taxonomy classifiers now available Data resources gtdb	0	86	July 27, 2026
DeepTaxa, a QIIME 2 plugin for 16S taxonomy Community Contributions classifier , greengenes2 , taxonomy , 16s	1	212	July 2, 2026
NaMeco - pipeline for nanopore reads Community Contributions nanopore	1	249	May 17, 2026
Under the hood of the "Moving Pictures" tutorial Community Contributions dada2 , diversity , moving-pictures , deblur	0	218	May 13, 2026
MIMt database for 16S, 18S, ITS, 23S and 28S new release available (March 26) Community Contributions its , feature-classifier , ribosomal-database , 16s , taxonomy	0	147	March 18, 2026
Gut-to-soil tutorial typo Tutorials	2	103	January 16, 2026
PRONAME: Enhancing Taxonomic Accuracy with Nanopore Long-Read Metabarcoding and QIIME2 Community Contributions	2	888	December 29, 2025
Exciting News: New QIIME 2 Tutorial on Arbuscular Mycorrhizal Fungi (AMF) Analysis Now Available! Tutorials taxonomy	0	190	November 4, 2025
Python Tutorial: Data Visualization with Dokdo API Tutorials tutorial	51	6103	September 18, 2025
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt Tutorials plugin-development , feature-classifier , tutorials , taxonomy , rescript	8	67009	February 17, 2023
PICRUSt installation on Mac Community Contributions install , picrust	0	84	April 29, 2025
ITS, 18S, 23S and 28S new reference databases to use in QIIME2 Community Contributions its , qiime2 , classifier , 18s	0	224	April 17, 2025
q2-boots: bootstrapped and rarefaction-based diversity analysis 🥾 Plugins q2-boots	0	454	August 14, 2024
Building a COI database from BOLD references Tutorials	73	22327	February 15, 2024