classify-sklearn vs classify-consensus-vsearch - classification depth
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2
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29
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June 13, 2025
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Shotgun sequencing of Fungi - UNITE or KRAKEN2
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1
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18
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June 11, 2025
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Minimum length of read in ASV (DADA2)
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5
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41
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June 8, 2025
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Difficulty assigning taxonomy to cyanobacterial ASVs
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2
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37
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June 5, 2025
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Classify the phylum of d__Eukaryota;__
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6
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75
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May 21, 2025
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mismatch between taxonomy and sequence data that download from NCBI using qiime rescript get-ncbi-data
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3
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22
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May 19, 2025
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pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!)
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12
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6983
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May 9, 2025
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how to select samples using stacked barplot
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2
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25
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May 7, 2025
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RESCRIPt GTDB 226.0
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3
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49
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June 6, 2025
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Greengenes2 2024.09 phylogenetic tree
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7
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93
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June 2, 2025
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Almost all Reads are unclassified - custom 18S V4 classifier
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13
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149
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May 26, 2025
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SILVA 138.2 genus names with strain code
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3
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52
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April 24, 2025
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taxonomy mitochondria vs D_4__Mitochondria
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2
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25
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April 22, 2025
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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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14
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284
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May 18, 2025
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Rescript get-ncbi-data MemoryError
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6
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39
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May 14, 2025
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biom add-metadata: Error in biom file while adding Taxonomy
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4
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18
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May 8, 2025
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alpha and beta diversity
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2
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31
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April 6, 2025
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Specific taxa abundance
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5
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58
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May 3, 2025
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low proportion of identified ITS - OTU features
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3
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56
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April 28, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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100
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March 27, 2025
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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59
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March 26, 2025
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Original formating of BOLD data
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3
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34
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April 25, 2025
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SILVA vs PR2 database using qiime2
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1
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87
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March 19, 2025
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Contents of imported database
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6
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27
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March 18, 2025
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Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
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6
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103
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April 17, 2025
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Unable to find all taxon as a result of taxanomic analysis
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3
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27
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April 13, 2025
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ASV with missing taxonomic annotation
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2
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60
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March 11, 2025
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Importing COI data from BOLD
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3
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24
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April 9, 2025
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Is it valid to rename ASVs classified as ‘uncultivated’ as ‘unclassified’?
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9
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52
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March 5, 2025
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Greengenes2 2024.09
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3
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2170
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March 3, 2025
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