PICRUST2 Input Data setting
|
|
1
|
13
|
July 8, 2025
|
Dealing with Poor Taxonomic Assignments
|
|
6
|
53
|
June 24, 2025
|
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt
|
|
26
|
59883
|
June 23, 2025
|
classify-sklearn vs classify-consensus-vsearch - classification depth
|
|
2
|
44
|
June 13, 2025
|
Shotgun sequencing of Fungi - UNITE or KRAKEN2
|
|
1
|
28
|
June 11, 2025
|
Minimum length of read in ASV (DADA2)
|
|
5
|
64
|
June 8, 2025
|
Difficulty assigning taxonomy to cyanobacterial ASVs
|
|
2
|
46
|
June 5, 2025
|
Classify the phylum of d__Eukaryota;__
|
|
7
|
78
|
June 21, 2025
|
mismatch between taxonomy and sequence data that download from NCBI using qiime rescript get-ncbi-data
|
|
4
|
23
|
June 19, 2025
|
pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!)
|
|
12
|
7118
|
May 9, 2025
|
how to select samples using stacked barplot
|
|
2
|
27
|
May 7, 2025
|
RESCRIPt GTDB 226.0
|
|
3
|
56
|
June 6, 2025
|
Greengenes2 2024.09 phylogenetic tree
|
|
7
|
105
|
June 2, 2025
|
Almost all Reads are unclassified - custom 18S V4 classifier
|
|
13
|
156
|
May 26, 2025
|
SILVA 138.2 genus names with strain code
|
|
3
|
57
|
April 24, 2025
|
taxonomy mitochondria vs D_4__Mitochondria
|
|
2
|
26
|
April 22, 2025
|
QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
|
|
14
|
293
|
May 18, 2025
|
Rescript get-ncbi-data MemoryError
|
|
6
|
44
|
May 14, 2025
|
biom add-metadata: Error in biom file while adding Taxonomy
|
|
4
|
24
|
May 8, 2025
|
alpha and beta diversity
|
|
2
|
36
|
April 6, 2025
|
Specific taxa abundance
|
|
5
|
58
|
May 3, 2025
|
low proportion of identified ITS - OTU features
|
|
3
|
58
|
April 28, 2025
|
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
|
|
8
|
108
|
March 27, 2025
|
TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
|
|
4
|
68
|
March 26, 2025
|
Original formating of BOLD data
|
|
3
|
34
|
April 25, 2025
|
SILVA vs PR2 database using qiime2
|
|
1
|
90
|
March 19, 2025
|
Contents of imported database
|
|
6
|
27
|
March 18, 2025
|
Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
|
|
6
|
111
|
April 17, 2025
|
Unable to find all taxon as a result of taxanomic analysis
|
|
3
|
27
|
April 13, 2025
|
ASV with missing taxonomic annotation
|
|
2
|
66
|
March 11, 2025
|