Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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60
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March 27, 2025
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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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1
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26
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March 27, 2025
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TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes?
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4
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24
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March 26, 2025
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Original formating of BOLD data
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2
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22
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March 25, 2025
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low proportion of identified ITS - OTU features
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1
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18
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March 19, 2025
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SILVA vs PR2 database using qiime2
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1
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16
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March 19, 2025
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Contents of imported database
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6
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20
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March 18, 2025
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Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
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5
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43
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March 17, 2025
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Unable to find all taxon as a result of taxanomic analysis
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2
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19
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March 13, 2025
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ASV with missing taxonomic annotation
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2
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29
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March 11, 2025
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pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!)
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9
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6410
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March 9, 2025
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Importing COI data from BOLD
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2
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16
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March 8, 2025
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Is it valid to rename ASVs classified as ‘uncultivated’ as ‘unclassified’?
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9
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37
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March 5, 2025
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Greengenes2 2024.09
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3
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1453
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March 3, 2025
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how to phylogenetically analyse 16S genes recovered from metagenome?
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2
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40
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March 3, 2025
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Taxonomy file has only 30 features
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2
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27
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March 3, 2025
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Big data analysis in QIIME2: how to obtain the level-7.csv
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2
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27
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March 22, 2025
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Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification
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4
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95
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March 21, 2025
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Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt
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24
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57251
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February 8, 2025
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Impact of number of bootstraps on RDP classification
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2
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42
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March 7, 2025
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classifying sequences-
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7
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48
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February 21, 2025
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Filtering eukaryotes from SILVA database
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4
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32
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February 17, 2025
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qiime2 feature-classifier fit-classifier-naive-bayes KILLED
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2
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32
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February 17, 2025
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Database for soil metagenomic 16S: Phytopathogenic?
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0
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26
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January 14, 2025
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Linking Greengenes2 to another feature table
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6
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72
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February 14, 2025
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How to train a GTDB SSU classifier using RESCRIPt
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5
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1924
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January 13, 2025
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Placing filtered ASV sequences into guide tree, per clade
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3
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35
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January 10, 2025
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Introducing Greengenes2 2022.10
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83
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25224
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January 9, 2025
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Assistance with Genus-Level Classification and Filtering ASV/OTUs
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17
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206
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February 13, 2025
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How to train a UNITE classifier using RESCRIPt
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11
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1469
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January 3, 2025
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