Topics tagged fungi

Topic	Replies	Views	Activity
Q2-ITSxpress: A tutorial on a QIIME 2 plugin to trim ITS sequences Plugins tutorial , its , fungi	39	21862	January 10, 2025
pre-trained UNITE ITS classifiers for QIIME 2024.5 (and older!) Data resources feature-classifier , taxonomy , its , fungi , unite	9	6229	March 15, 2024
qiime2 files to FUNguild Other Bioinformatics Tools fungi	1	342	November 14, 2023
What is the meaning of "Other" category produced within UNITE+INSD all eukaryote using UCLUST General Discussion taxonomy , fungi	1	191	July 29, 2023
q2-hitac: a plugin for taxonomic classification of fungal ITS sequences Community Contributions taxonomy , its , fungi	0	352	December 15, 2022
Integrate fungal qPCR and composition results General Discussion fungi	1	400	June 2, 2022
Optimizing taxonomy assignment to reduce unassigned ITS reads User Support feature-classifier , taxonomy , its , fungi , unite	4	1344	March 26, 2022
Large amount of 'Unassigned' ITS sequences in classify-consensus-blast results User Support feature-classifier , taxonomy , its , fungi	8	1635	November 22, 2021
Fungal ITS sequence from Illumina returns many unclassified reads User Support feature-classifier , taxonomy , fungi	3	1340	October 27, 2021
Fungi ITS taxonomy bar plot and relative frequency biom does not match in ratio User Support taxonomy , its , fungi , relative-frequency	7	649	October 23, 2021
classifier for fungi data analysis Library Plugin Support feature-classifier , taxonomy , fungi	2	1070	May 20, 2021
Exporting processed .qza reads into separate .fasta files for each sample User Support export , fasta , fungi	3	1600	May 25, 2021
Taxonomic assignment with UNITE database: most reads classified as "s__unidentified" ITSxpress taxonomy , fungi , unite , q2-itsxpress	9	3115	April 10, 2021
Fungi taxonomic analysis User Support feature-classifier , fungi	25	2480	September 1, 2020
ITS classification - nothing beyond phylum level User Support feature-classifier , taxonomy , its , fungi , unite	7	2281	July 7, 2020
q2-itsxpress creates incomplete manifest after trim-pair-output-unmerged Library Plugin Support dada2 , its , fungi	3	556	June 14, 2019
Merging (or not) ITS2 amplicons with variable length User Support dada2 , fungi	19	2525	February 25, 2019
Metaphlan2 vs vsearch for fungal metagenomic shotgun sequences User Support vsearch , fungi , fastq	9	2338	December 21, 2018
Assigning guild to ITS data in OTU table Other Bioinformatics Tools fungi	0	792	August 6, 2018
Is there a flowchart for fungi analysis! User Support pending-development , its , fungi	6	1418	April 5, 2018
Qiime database for fungi sequencing in ITS1 User Support its , fungi	5	1632	April 5, 2018
Kingdom-level classification of fungal ITS sequences User Support feature-classifier , taxonomy , fungi	2	1583	February 16, 2018
Fungal ITS classification with UNITE database User Support feature-classifier , its , fungi	10	6514	February 16, 2018
Does the pretrained classifer silva-119-99-nb-classifier detect fungi? User Support feature-classifier , silva , fungi	2	896	December 22, 2017
ITS import issues User Support import , its , fungi	3	597	December 1, 2017
Should I truncate all sequences to the same length for doing ITS? User Support feature-classifier , taxonomy , its , fungi	4	1481	November 18, 2017