Library Support

PICRUSt2 This category is a support forum for the q2-picrust2 plugin. Support is primarily provided by @Robyn_Wright. q2-fmt This category is a support forum for the q2-fmt plugin. Support is primarily provided by @cherman2. Silva A space for questions and support related to the Silva online resource for quality checked and aligned ribosomal RNA sequence data. This category is moderated with assistance from @silva-team. ITSxpress

Topic	Replies	Views	Activity
About the Library Support category Library Support	0	1321	November 14, 2018
make qiime2 2026.4 compatible with classifiers made with Sklearn Version 1.4.2? Silva	3	19	May 15, 2026
Q2 2024.5-present Silva classifier update Silva	11	139	March 7, 2026
V3-V4 silva classifier Silva	6	208	January 12, 2026
Interpretation of % of variance explained in Gemelli rPCA (summing to 100%?) Library Support gemelli	3	100	January 9, 2026
ITSxpress error ITSxpress	4	91	January 12, 2026
How to install q2-viromics Library Support	1	39	December 12, 2025
Gemelli output interpretation Library Support deicode , gemelli	4	842	December 6, 2025
How to perform SILVA V3 classifier training? Silva feature-classifier , taxonomy , silva	11	232	January 4, 2026
Can silva database be used in protist taxonomic assignment? Silva	3	57	January 4, 2026
ITSxpress Plugin error: "Missing sequence for record beginning on line 9" Library Support q2-itsxpress	7	57	November 28, 2025
Metnet plugin downstream analysis and files produced Library Support q2-metnet	5	101	December 27, 2025
q2-boots and multiple metrics Library Support q2-boots	2	56	November 20, 2025
q2 longitudinal linear mixed effects model random effects Library Support	2	69	September 22, 2025
please help creating human-stool-weighted for v3v4 silva (q2-clawback) Library Support clawback	1	60	September 15, 2025
q2fmt distance to baseline metric q2-fmt fmt	2	61	September 5, 2025
Alternative Metabolomic Plugins Library Support picrust	3	81	August 14, 2025
Picrust2 q2-amplicon-2025.4 installation error PICRUSt2 picrust	3	224	September 8, 2025
Sidle for multiple partly overlapping regions? Library Support sidle	12	632	July 8, 2025
Greengenes2 vs. SILVA Silva silva , greengenes2	0	184	July 3, 2025
q2 boots error "diagonal can only contain zeros" Library Support	6	60	June 26, 2025
Using q2-boots as upstream input for q2-fmt q2-fmt	5	93	June 25, 2025
Error running qiime longitudinal linear-mixed-effects Library Support longitudinal	2	58	June 23, 2025
Metacyc pathways after PICRUST2 PICRUSt2	2	235	June 9, 2025
Difficulty assigning taxonomy to cyanobacterial ASVs Silva taxonomy , greengenes , silva , ncbi	2	84	June 5, 2025
q2-fmt beta version installation q2-fmt fmt	2	63	June 2, 2025
SILVA 138.2 classifier Silva feature-classifier , silva	3	361	June 28, 2025
q2-sidle error: exceeds max_bin_len Library Support sidle	1	36	May 13, 2025
Primer sequences still present in representative-sequences after running ITSxpress Library Support q2-itsxpress	1	67	May 7, 2025
Using a GNEISS equivalent in 2024.10 Library Support gneiss	2	84	April 22, 2025