Topics tagged feature-classifier

Topic	Replies	Views	Activity
Advice on Conducting a Targeted Pathogenic Species Search using ITS1 data using QIIME2 feature-classifier plugin General Discussion feature-classifier	3	68	September 24, 2026
16S Sequencing for Species-Level Resolution Technical Support feature-classifier , taxonomy	5	212	September 8, 2026
pre-trained UNITE ITS classifiers for QIIME 2026.7 and scikit-learn=1.7.1 Data resources feature-classifier , unite , taxonomy , fungi , its	15	9463	August 31, 2026
Using RESCRIPt's 'extract-seq-segments' to extract reference sequences without PCR primer pairs. Tutorials its , trnl , co1 , ssu , lsu , rescript , taxonomy , tutorial , feature-classifier	5	6811	November 14, 2023
Train a taxonomy classifier by extracting an amplicon region from a curated sequence alignment (using SILVA as an example). Tutorials feature-classifier , silva , taxonomy , rescript , alignment , tutorial	0	123	August 12, 2026
RESCRIPt-evaluate Plugins feature-classifier , taxonomy , rescript , rescript-evaluate	0	105	July 27, 2026
Naive Bayes classifier trained on a custom NCBI RefSeq V3-V4 database classifies almost all ASVs as same species User Support feature-classifier , taxonomy	1	83	July 15, 2026
ITS Classifier: Extract reference reads - HiSeq: User Support feature-classifier , hiseq , taxonomy	2	89	May 31, 2026
ITS2 classification: identical sequences but different results (DADA2 vs merged) User Support feature-classifier , taxonomy	6	150	April 7, 2026
MIMt database for 16S, 18S, ITS, 23S and 28S new release available (March 26) Community Contributions its , feature-classifier , ribosomal-database , 16s , taxonomy	0	139	March 18, 2026
Annotation and Classifier question User Support feature-classifier	17	262	March 18, 2026
process killed qiime 2024.5 on Ubuntu 24.04.4 LTS when running on multicore Technical Support feature-classifier	1	76	March 11, 2026
Integrating V3-V4 and V4 16S datasets for large-scale meta-analysis: Is Greengenes2 the optimal choice for cross-region alignment? General Discussion taxonomy , feature-classifier , dada2 , greengenes2	1	189	March 6, 2026
QIIME2-amplicon-2025.7 16S PacBio classification issues/discussion Technical Support feature-classifier , classifier , taxonomy	6	190	February 24, 2026
The differences in taxonomy output by the feature-classifier trainer and the full-length trainer User Support taxonomy , feature-classifier	6	156	January 18, 2026
"over-classification" of ASV taxonomy? User Support dereplicate , rescript , taxonomy , naivebayes , feature-classifier	2	106	January 9, 2026
How to perform SILVA V3 classifier training? Silva silva , taxonomy , feature-classifier	9	315	November 17, 2025
Troubleshoot classification where all ASVs are unassigned? User Support taxonomy , feature-classifier	7	166	December 2, 2025
Evaluate custom taxonomic classifier with RESCRIPt? User Support rescript , unite , taxonomy , feature-classifier	5	210	November 27, 2025
MIMt database new release!!! QIIME2 classifiers for markers 16S, ITS, 18S, 23S and 28S Other Bioinformatics Tools ribosomal-database , taxonomy , feature-classifier	0	143	November 3, 2025
Feature-clasifier V3-V4 Technical Support feature-classifier	6	195	October 21, 2025
Trained classifier output not found Technical Support feature-classifier , dada2	6	136	September 11, 2025
Question about consensus taxonomy assignment in classify-consensus-vsearch User Support feature-classifier	6	235	August 21, 2025
Is there a pre-trained QIIME 2 classifier with full-length 16S (.qza)? Ideas and Suggestions feature-classifier	10	344	August 14, 2025
16S SRNA General Discussion feature-table , taxonomy , feature-classifier	1	108	August 2, 2025
Greengenes2 and RESCRIPt User Support greengenes2 , taxonomy , rescript , feature-classifier	2	167	July 9, 2025
SILVA 138.1 classifier trained on version 2023.5 and used in 2024.5 User Support rescript , feature-classifier	2	274	July 3, 2025
Dealing with Poor Taxonomic Assignments User Support taxonomy , rescript , feature-classifier	6	226	June 24, 2025
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt Tutorials plugin-development , feature-classifier , tutorials , taxonomy , rescript	8	66785	February 17, 2023
Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier General Discussion feature-classifier	2	113	June 18, 2025