Topics tagged fungi

Topic	Replies	Views	Activity
pre-trained UNITE ITS classifiers for QIIME 2026.10 and scikit-learn=1.7.1 Data resources feature-classifier , taxonomy , its , fungi , unite	15	9556	August 31, 2026
Can I create one OTU table from mixed ITS1, ITS2, and full ITS fungal datasets? General Discussion fungi , q2-itsxpress	5	120	May 6, 2026
mixed orientation, dual-indexed, demultiplexed samples User Support import , fungi	1	89	July 11, 2025
Shotgun sequencing of Fungi - UNITE or KRAKEN2 General Discussion feature-classifier , taxonomy , its , fungi	1	150	June 11, 2025
Q2-ITSxpress: A tutorial on a QIIME 2 plugin to trim ITS sequences Plugins tutorial , its , fungi	24	23868	January 10, 2025
qiime2 files to FUNguild Other Bioinformatics Tools fungi	1	469	November 14, 2023
What is the meaning of "Other" category produced within UNITE+INSD all eukaryote using UCLUST General Discussion taxonomy , fungi	1	224	July 29, 2023
q2-hitac: a plugin for taxonomic classification of fungal ITS sequences Community Contributions taxonomy , its , fungi	0	394	December 15, 2022
Integrate fungal qPCR and composition results General Discussion fungi	1	457	June 2, 2022
Optimizing taxonomy assignment to reduce unassigned ITS reads User Support feature-classifier , taxonomy , its , fungi , unite	3	1458	February 22, 2022
Large amount of 'Unassigned' ITS sequences in classify-consensus-blast results User Support feature-classifier , taxonomy , its , fungi	7	1813	October 21, 2021
Fungal ITS sequence from Illumina returns many unclassified reads User Support feature-classifier , taxonomy , fungi	2	1438	September 26, 2021
Fungi ITS taxonomy bar plot and relative frequency biom does not match in ratio User Support taxonomy , its , fungi , relative-frequency	6	732	September 21, 2021
classifier for fungi data analysis Library Support feature-classifier , taxonomy , fungi	2	1134	May 20, 2021
Exporting processed .qza reads into separate .fasta files for each sample User Support export , fasta , fungi	2	1719	April 24, 2021
Taxonomic assignment with UNITE database: most reads classified as "s__unidentified" ITSxpress taxonomy , fungi , unite , q2-itsxpress	6	3321	March 10, 2021
Fungi taxonomic analysis User Support feature-classifier , fungi	24	2739	August 1, 2020
ITS classification - nothing beyond phylum level User Support feature-classifier , taxonomy , its , fungi , unite	6	2382	June 6, 2020
q2-itsxpress creates incomplete manifest after trim-pair-output-unmerged Library Support dada2 , its , fungi	3	604	June 14, 2019
Merging (or not) ITS2 amplicons with variable length User Support dada2 , fungi	16	2889	January 25, 2019
Metaphlan2 vs vsearch for fungal metagenomic shotgun sequences User Support vsearch , fungi , fastq	8	2518	November 20, 2018
Assigning guild to ITS data in OTU table Other Bioinformatics Tools fungi	0	809	August 6, 2018
Is there a flowchart for fungi analysis! User Support pending-development , its , fungi	3	1460	March 5, 2018
Qiime database for fungi sequencing in ITS1 User Support its , fungi	2	1653	March 5, 2018
Kingdom-level classification of fungal ITS sequences User Support feature-classifier , taxonomy , fungi	1	1627	January 16, 2018
Fungal ITS classification with UNITE database User Support feature-classifier , its , fungi	8	7094	January 10, 2018
Does the pretrained classifer silva-119-99-nb-classifier detect fungi? Silva feature-classifier , silva , fungi	1	937	November 21, 2017
ITS import issues User Support import , its , fungi	2	639	October 31, 2017
Should I truncate all sequences to the same length for doing ITS? User Support feature-classifier , taxonomy , its , fungi	3	1555	October 18, 2017