Latest General Discussion topics

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	1	8391	February 20, 2020
About the General Discussion category	0	1018	November 14, 2018
Test for interaction with ANCOM-BC	3	22	October 16, 2026
pcoa ordination queued	0	32	October 12, 2026
Windows on Arm support?	1	53	October 7, 2026
Gemelli Joint-RPCA biplot axis 1 is 100% gemelli	1	94	October 6, 2026
Apple ending general Rosetta support in macOS 28 — what is the recommended path for QIIME 2 on Apple Silicon Macs?	2	159	September 29, 2026
NCBI or SILVA for curating a custom 16S rDNA reference database?	12	287	September 28, 2026
Advice on Conducting a Targeted Pathogenic Species Search using ITS1 data using QIIME2 feature-classifier plugin feature-classifier	3	68	September 24, 2026
Recommended QIIME 2 workflow for ONT full-length 16S data and integration of EMU results for alpha/beta diversity	2	115	September 22, 2026
kmers for taxonomy-free beta-diversity measures: an opportunity to integrate amplicon and shotgun analysis? q2-kmerizer	2	62	September 2, 2026
ASV vs OTU for fungal ITS its	11	1593	August 30, 2026
Is it bad to use multiple Qiime2 versions in one workflow?	2	67	August 29, 2026
Why truncate with dada2 when ITSxpress is an option? dada2 , q2-itsxpress	16	296	August 17, 2026
option to rotate the barplots 90 degrees	6	116	August 3, 2026
Seeking Advice on Primer and Adapter Trimming for MiSeq Amplicon Sequencing Data Using Cutadapt cutadapt , trim	1	224	August 3, 2026
Sequencing Depth Control: Rarefying vs Rarifaction vs CLR vs Conditional Filtering alpha-rarefaction	0	98	July 31, 2026
Is my truncation parameter exploration sufficient, and is my interpretation correct? dada2	1	66	July 28, 2026
Identifying Contaminants Before Filtering: E Coli? filter-features	3	100	July 16, 2026
Sequencing platform fully confounded with study period: MiSeq vs NextSeq 2000 (16S rRNA V3-V4) dada2 , merging , batch-effects	3	121	July 7, 2026
Edible wild plants in human diet: effects on the gut microbiome	0	34	July 2, 2026
q2-boots, q2-gemelli, rarefaction, and sampling depths gemelli , q2-boots	8	214	June 22, 2026
Legend too long for Genus-level bar plots in QIIME2 (does not fit in Word/manuscript)	1	81	June 17, 2026
High number of OTUs/features in low-depth Nanopore 16S gastric biopsy data	4	110	June 11, 2026
Core metrics sugesttions	2	69	June 11, 2026
da-barplot-ancombc into inkscape	1	107	January 22, 2025
Running DADA2 on pre-processed data dada2	7	188	June 3, 2026
Processing Thermo Ion 16S Metagenomics Kit data in QIIME2: primer trimming, denoise-pyro, and SILVA classifier choice	4	98	May 28, 2026
Query about false read merging or no read merging dada2 , merge	1	52	May 26, 2026
Abundance overlap microbiome	2	81	May 25, 2026

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…