Latest General Discussion topics

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	2	7619	February 27, 2020
About the General Discussion category	1	977	March 13, 2023
SILVA 138.2 genus names with strain code taxonomy	3	23	April 24, 2025
Alpha diversity with filtered raw data or unfiltered raw data dada2 , r , feature-table , alpha	1	11	April 24, 2025
Density plots along PCoA plot axes?	7	44	April 23, 2025
Getting oxygen requirements for bacterial species identified by 16S sequencing	4	279	April 23, 2025
taxonomy mitochondria vs D_4__Mitochondria r , taxonomy	2	17	April 22, 2025
PERMANOVA and PERMDISP and pairwise	7	68	April 21, 2025
still default behavior after setting TMPDIR	7	48	April 15, 2025
Best analysis to do after CCA?	1	29	April 14, 2025
Alpha diversity without rarefaction alpha	2	45	April 10, 2025
How does the sklearn classifier handle ambiguous bases? feature-classifier , naivebayes	1	35	April 8, 2025
Best Studies for Genus Accuracy of 16S Sequencing	5	62	April 7, 2025
How can I perform learnErrors on a subset of reads? dada2	3	32	April 7, 2025
NCBI: How to link BioSample to BankIt submission?	0	19	March 28, 2025
QIIME in clinical hospital and commercial laboratory settings	11	76	April 4, 2025
Visualizing ANCOMBC data over time	3	31	April 1, 2025
QIIME2 microbiome analysis and python version demux , fastq	2	50	March 29, 2025
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one? dada2 , taxonomy , gtdb , greengenes2	8	79	March 27, 2025
TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes? taxonomy , tef1 , naivebayes	4	40	March 26, 2025
Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights	0	40	March 26, 2025
DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"	1	24	March 25, 2025
General or taxonomic level alpha diversity?	2	31	March 24, 2025
Reading the generated data.	1	20	March 24, 2025
Closed reference OTU picking of V3-V4 amplicon against full-length reference database closed-reference	3	25	March 21, 2025
Question about analyzing different sample types	3	42	March 20, 2025
SILVA vs PR2 database using qiime2 feature-classifier , taxonomy , silva , 18s	1	36	March 19, 2025
Contents of imported database taxonomy , rescript	6	22	March 18, 2025
Missing species sequence on Greengenes2 2024.09 greengenes2	2	22	March 18, 2025
How important is it to remove spacers prior to DADA2 filtering trimming, etc?	2	23	March 17, 2025

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…