Latest General Discussion topics

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	2	7190	February 27, 2020
About the General Discussion category	1	970	March 13, 2023
stats post-hoc ANCOM ancom	3	16	October 7, 2024
Training silva classifiers based on NCBI taxonomy feature-classifier , rescript	1	23	October 3, 2024
One vs two adaptor sequences using cutadapt cutadapt , qiime2	4	60	September 27, 2024
Deblur usage for truncation from the end of the read dada2 , deblur	1	6	September 27, 2024
number of samples for differential abundance analysis	2	13	September 26, 2024
Random sampling after DADA2	3	29	September 26, 2024
Interpreting Silva Bacterial Taxonomy (Incertae Sedis) silva	2	34	September 24, 2024
Human gut microbiome study design	2	32	September 23, 2024
Is it possible to generate raw sequence data from any of the early-stage outputs of the QIIME2 pipeline? dada2 , import	2	23	September 18, 2024
Filtering ANCOM-BC results: W values and fold-change ancom-bc	4	38	September 17, 2024
Advantage of collapsed differential abundance	5	177	September 16, 2024
Nanopore Long Read Demultiplexed Full 16S rRNA Seq	7	76	September 12, 2024
Qiime2 metagenome october 2024 update	4	52	September 12, 2024
Issue with SILVA 138.2 and RESCRIPt Compatibility taxonomy	2	54	September 12, 2024
Seperating 16S, 18S, ITS, COI and chloroplast sequences	3	29	September 12, 2024
Is there a way to use files from Nanopore in Qiime2 ? dada2 , nanopore	5	1190	September 11, 2024
Arbitrary ASV fragment placement in Greengenes2 greengenes2	0	34	September 6, 2024
Create an ASV table using fasta sequences	11	57	September 6, 2024
Unclassified at the phylum level feature-classifier , taxonomy , greengenes2	5	71	September 4, 2024
What laptop does qiime2 run on	3	34	September 2, 2024
Manually Adding Positive Controls to classifier or reference database taxonomy , feature-table , rescript	4	484	August 30, 2024
Associate changes in taxa relative abundances (for all taxa) with calculated changes of continuous metadata variables longitudinal	5	70	August 29, 2024
Best Discussion Forum for Greengenes 2? greengenes , ribosomal-database , greengenes2	7	104	August 28, 2024
Database With Best Accuracy at Genus Level for Human Microbiome? greengenes , ncbi , rdp , greengenes2	8	90	August 28, 2024
Reconciling 16s Databases in a Single Pipeline greengenes , silva , 16s , ncbi , rdp	5	56	August 28, 2024
How to choose between full-length Greengenes or SILVA for 16s rRNA V1-V2 analysis with qiime2 pipeline?	1	34	August 27, 2024
Specificity and Sensitivity at Different Abundances? taxonomy , 16s , sequences	3	37	August 24, 2024
Alpha Diversity q2-longitudinal question	2	35	August 23, 2024

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…