General Discussion


Topic Replies Views Activity
Frequent Questions and "Best of the QIIME 2 Forum"
best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…

2 3839 February 27, 2020
About the General Discussion category
0 555 November 14, 2018
Why doesn't QIIME 2 have NMDS?
1 38 November 30, 2022
Different visualizations
2 25 November 30, 2022
FASTQ files so small?
1 22 November 30, 2022
Making sense of diversity estimates
9 1098 November 28, 2022
Parameters surrounding training of feature-classifier (16S V4-V5).
feature-classifier
2 35 November 28, 2022
How to know the relevance of each factor in diversity analysis
2 57 November 25, 2022
Multiplexing Different Genes Into one FASTQ vs. Keeping Them Separate
dada2 ,  taxonomy ,  multiplexed
1 54 November 23, 2022
Different Rarefaction Depths Between Sample Types
rarefaction
1 59 November 23, 2022
Mock comunity workflow
quality-control
1 82 November 27, 2022
Can 18S rRNA full length sequencing data detect archaeal diversity..?
taxonomy ,  18s
0 36 October 17, 2022
Differential Abundance Methods & Quality
ancom
17 325 November 22, 2022
which file should I use for generating beta-diversity?
3 64 November 18, 2022
Determining paired end sequences
queued
1 40 November 12, 2022
Help with PERMANOVA interpretation
1 57 November 11, 2022
phylogenetic tree output of fragment-insertion
fragment-insertion
1 39 November 9, 2022
16S and ITS sequencing in single FASTQ file
6 193 November 8, 2022
can BOLD references be used on invertebrates
3 67 November 7, 2022
Is there anyone who used generalized linear model to compare the Alpha diversity?
5 135 November 4, 2022
What is the acceptable percentage of merged?
dada2 ,  merge
2 77 October 21, 2022
after diversity, compare between 2 samples
taxonomy ,  ancom
2 55 November 17, 2022
no overlapping reads, import just R1 read data in qiime
import
1 47 October 14, 2022
Feedback request: data visualization with QIIME 2
2 92 October 27, 2022
ITS extraction after joining paired-end reads?
its ,  joining ,  q2-itsxpress
2 88 October 13, 2022
Rarefaction Curve and Observed Features
3 62 October 12, 2022
Annotation result
2 61 October 9, 2022
Creating KEGG-based distance matrix
distance-matrix
1 77 October 8, 2022
How can I compare the dispersion of two groups to reinforce the results of PERMANOVA ?
2 92 October 8, 2022
Converting fastq to OTU
taxonomy
2 86 October 5, 2022