Latest General Discussion topics

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	2	7661	February 27, 2020
About the General Discussion category	1	980	March 13, 2023
Using PCoA versus PCA	8	11422	May 23, 2025
Can trimming and dada 2 dada2	3	26	May 19, 2025
Knowing how many sequences did not get given taxonomy	1	11	May 19, 2025
Would you like me to help with troubleshooting the differences between R analysis and the QIIME2 results?	1	20	May 19, 2025
Try to compare 16s and wgs with greengenes2 queued	0	16	May 16, 2025
how to select samples using stacked barplot taxonomy , barplot , filter-samples	2	20	May 7, 2025
Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data queued	0	40	May 5, 2025
Optimising spike-in quantity using qPCR primers	1	32	May 1, 2025
How does the sklearn classifier handle ambiguous bases? feature-classifier , naivebayes	2	57	April 27, 2025
SILVA 138.2 genus names with strain code taxonomy	3	38	April 24, 2025
Alpha diversity with filtered raw data or unfiltered raw data dada2 , r , feature-table , alpha	1	49	April 24, 2025
Density plots along PCoA plot axes?	7	53	April 23, 2025
Getting oxygen requirements for bacterial species identified by 16S sequencing	4	284	April 23, 2025
taxonomy mitochondria vs D_4__Mitochondria r , taxonomy	2	22	April 22, 2025
PERMANOVA and PERMDISP and pairwise	7	78	April 21, 2025
still default behavior after setting TMPDIR	8	58	May 17, 2025
Best analysis to do after CCA?	1	35	April 14, 2025
Alpha diversity without rarefaction alpha	2	59	April 10, 2025
Best Studies for Genus Accuracy of 16S Sequencing	5	73	April 7, 2025
How can I perform learnErrors on a subset of reads? dada2	3	34	April 7, 2025
NCBI: How to link BioSample to BankIt submission?	0	22	March 28, 2025
QIIME in clinical hospital and commercial laboratory settings	11	80	April 4, 2025
Visualizing ANCOMBC data over time	3	41	April 1, 2025
QIIME2 microbiome analysis and python version demux , fastq	2	54	March 29, 2025
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one? dada2 , taxonomy , gtdb , greengenes2	8	90	March 27, 2025
TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes? taxonomy , tef1 , naivebayes	4	47	March 26, 2025
Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights	0	41	March 26, 2025
DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"	1	27	March 25, 2025

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…