General Discussion


Topic Replies Views Activity
Frequent Questions and "Best of the QIIME 2 Forum"
best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…

3 1593 February 27, 2020
About the General Discussion category
1 301 November 14, 2018
Creating a phylogenetic tree for relationship between samples
queued
2 9 January 19, 2021
Has anyone used chloroplast "contaminants" to do host phylogeography?
taxonomy ,  queued
1 9 January 18, 2021
Batch correction and library prep and alfa diversity
2 28 January 18, 2021
More Replicas Presented!!!
6 30 January 16, 2021
How to create a beta diversity plot similar to this one from the Global Gut study?
7 83 January 14, 2021
Adjusted Permdisp?
permdisp
2 54 January 13, 2021
Can you analyse two data sets sequence with V3 and V4 together?
dada2
2 23 January 12, 2021
best practices in 16S analyses
4 99 January 12, 2021
How to analyse microbiome data that already has gone halfway?
3 32 January 11, 2021
Is it something wrong with using Standardized Euclidean metric (seuclidean) for Beta diversity and group significance?
diversity ,  group-significance
2 59 January 7, 2021
How to Improve Functional Gene Varaint Calls?
1 25 January 6, 2021
raw paired sequences were mixed
import ,  dada2
6 79 December 29, 2020
RE: raw paired sequences were mixed
4 39 December 28, 2020
Help disentangling bimodal process in PCoA plot
2 41 December 24, 2020
How do I choose the database for the archaea amplicons anotation.
silva
7 95 December 23, 2020
Pick up a Right Alignemnt Method.
10 98 December 22, 2020
How to compare taxonomy from a single sample against different groups
ancom ,  taxonomy
5 113 December 22, 2020
Does Normalization/Rarefaction before ANOSIM/ADONIS
2 69 December 21, 2020
Duel of BLAST+ & Vesearch Classifiers!
15 124 December 19, 2020
DADA2 and divergent reads
1 78 October 8, 2020
weird taxanomic annotations
taxonomy
2 78 November 24, 2020
Mismatch between qiime2 taxa bar plot and phyloseq taxa bar plot
4 79 December 12, 2020
how reliable are my taxonomic classifications if I did not identify species?
8 103 December 12, 2020
q-score filtering prior to dada2 denoise with paired-end data, low feature frequency and # of samples observed in
3 57 December 10, 2020
Suggestions for ASV table with ITS (fungi)
2 58 December 9, 2020
dada2 or vsearch
6 103 December 7, 2020
Necessity of Alpha-, Beta Diversity and Rarefaction Before Drawing a Taxa Bar-plot.
alpha-rarefaction ,  alpha ,  barplot ,  beta
2 76 December 6, 2020
Primer removal from Reads.
2 59 December 4, 2020