Latest General Discussion topics

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	2	7636	February 27, 2020
About the General Discussion category	1	979	March 13, 2023
Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data queued	0	19	May 5, 2025
Optimising spike-in quantity using qPCR primers	1	24	May 1, 2025
How does the sklearn classifier handle ambiguous bases? feature-classifier , naivebayes	2	53	April 27, 2025
SILVA 138.2 genus names with strain code taxonomy	3	31	April 24, 2025
Alpha diversity with filtered raw data or unfiltered raw data dada2 , r , feature-table , alpha	1	44	April 24, 2025
Density plots along PCoA plot axes?	7	51	April 23, 2025
Getting oxygen requirements for bacterial species identified by 16S sequencing	4	283	April 23, 2025
taxonomy mitochondria vs D_4__Mitochondria r , taxonomy	2	20	April 22, 2025
PERMANOVA and PERMDISP and pairwise	7	73	April 21, 2025
still default behavior after setting TMPDIR	7	53	April 15, 2025
Best analysis to do after CCA?	1	35	April 14, 2025
Alpha diversity without rarefaction alpha	2	52	April 10, 2025
Best Studies for Genus Accuracy of 16S Sequencing	5	72	April 7, 2025
How can I perform learnErrors on a subset of reads? dada2	3	34	April 7, 2025
NCBI: How to link BioSample to BankIt submission?	0	21	March 28, 2025
QIIME in clinical hospital and commercial laboratory settings	11	78	April 4, 2025
Visualizing ANCOMBC data over time	3	36	April 1, 2025
QIIME2 microbiome analysis and python version demux , fastq	2	52	March 29, 2025
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one? dada2 , taxonomy , gtdb , greengenes2	8	83	March 27, 2025
TEF1 metabarcoding: Should I use BLAST or VSEARCH instead of Naive Bayes? taxonomy , tef1 , naivebayes	4	43	March 26, 2025
Investigating the Impact of Travel-Induced Environmental Shifts on Microbiome Stability: A Call for Collaborative Field Studies and Methodological Insights	0	41	March 26, 2025
DADA2 generated rep.seqs in R to QIIME2 for making use of the "qiime fragment-insertion sepp"	1	27	March 25, 2025
General or taxonomic level alpha diversity?	2	34	March 24, 2025
Reading the generated data.	1	23	March 24, 2025
Closed reference OTU picking of V3-V4 amplicon against full-length reference database closed-reference	3	28	March 21, 2025
Question about analyzing different sample types	3	44	March 20, 2025
SILVA vs PR2 database using qiime2 feature-classifier , taxonomy , silva , 18s	1	47	March 19, 2025
Contents of imported database taxonomy , rescript	6	25	March 18, 2025

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…