Latest General Discussion topics

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	2	7726	February 27, 2020
About the General Discussion category	1	981	March 13, 2023
Looking for Comprehensive Qiime2 Documentation	7	109	June 23, 2025
Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier feature-classifier	2	26	June 18, 2025
classify-sklearn vs classify-consensus-vsearch - classification depth taxonomy	2	34	June 13, 2025
Shotgun sequencing of Fungi - UNITE or KRAKEN2 feature-classifier , taxonomy , its , fungi	1	24	June 11, 2025
Feature table and representative sequences for downstream analyses feature-table	1	14	June 11, 2025
Rarefaction vs Rarefying and when to use them in your analysis pipeline q2-boots	12	134	June 10, 2025
PERMANOVA and DESeq2: Re-evaluating Covariates After Subsetting by Time Point permanova	1	20	June 9, 2025
maarjAM database	3	31	June 6, 2025
Difficulty assigning taxonomy to cyanobacterial ASVs taxonomy , greengenes , silva , ncbi	2	40	June 5, 2025
Analysing with multiple public datasets	4	30	June 5, 2025
Qiime2 ConQuR Plugin for Batch Correction (or alternative) batch-effects	2	32	June 4, 2025
Shotgun sequencing and Trimming dada2	2	19	June 3, 2025
Can I run QIIME2 on de-multiplexed 5R 16S files?	1	17	June 3, 2025
Try to compare 16s and wgs with greengenes2	0	24	May 16, 2025
MAG filtering prior functional annotation moshpit , q2-annotate	2	54	May 28, 2025
Using PCoA versus PCA	8	11677	May 23, 2025
Can trimming and dada 2 dada2	3	34	May 19, 2025
Knowing how many sequences did not get given taxonomy	1	15	May 19, 2025
Would you like me to help with troubleshooting the differences between R analysis and the QIIME2 results?	1	31	May 19, 2025
how to select samples using stacked barplot taxonomy , barplot , filter-samples	2	25	May 7, 2025
Request for Bioinformatics Support: Alpha and Beta Diversity Analyses for 16S rRNA Nanopore Sequencing Data	0	53	May 5, 2025
Optimising spike-in quantity using qPCR primers	1	39	May 1, 2025
How does the sklearn classifier handle ambiguous bases? feature-classifier , naivebayes	3	60	May 28, 2025
SILVA 138.2 genus names with strain code taxonomy	3	53	April 24, 2025
Alpha diversity with filtered raw data or unfiltered raw data dada2 , r , feature-table , alpha	1	53	April 24, 2025
Density plots along PCoA plot axes?	7	55	April 23, 2025
Getting oxygen requirements for bacterial species identified by 16S sequencing	4	285	April 23, 2025
taxonomy mitochondria vs D_4__Mitochondria r , taxonomy	2	26	April 22, 2025

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…