Topics tagged best-of-the-forum

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" General Discussion best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	1	8391	February 20, 2020
SEPP Plugin on WSL - Returning non-zero exit and enter a zombie state Technical Support fragment-insertion , best-of-the-forum	5	227	November 20, 2024
NovaSeq and Dada2 incompatibility. General Discussion dada2 , tutorial , best-of-the-forum	10	3354	August 6, 2024
Can we use extracted reference reads to calculate expected amplicon sizes? General Discussion best-of-the-forum	5	2610	August 13, 2019
Using multiple 16s variable regions for analysis User Support best-of-the-forum	4	601	January 24, 2024
Alpha and Beta Diversity Explanations and Commands Tutorials tutorial , beta , alpha , best-of-the-forum	6	90980	September 15, 2018
modeling bacterial features as indepedent variables General Discussion best-of-the-forum	4	1068	March 23, 2023
Chao1 and Shannon negatively correlated General Discussion best-of-the-forum	1	4861	July 21, 2022
Is it best to work on abundance tables of ASVs or taxa? General Discussion taxonomy , feature-table , 16s , asv , best-of-the-forum	3	1542	May 23, 2022
How to determine the components of PC1? User Support pcoa , unifrac , best-of-the-forum	1	1041	February 25, 2022
Discussion: methods for removing contaminants and cross-talk General Discussion best-of-the-forum	20	7693	November 14, 2021
Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R Tutorials best-of-the-forum	0	87764	May 11, 2018
Differential abundance analysis (e.g. ANCOM) for paired samples (e.g. normal tissue vs. tumor tissue from cancer patients) User Support ancom , best-of-the-forum	9	5821	December 11, 2020
first-distance and first-distance-baseline-0 User Support best-of-the-forum	7	1177	December 5, 2020
Songbird on paired samples Library Support q2-songbird , best-of-the-forum	11	1811	November 20, 2020
Help with understanding beta diversity calculation + results User Support best-of-the-forum	5	3851	November 3, 2020
q2-cutadapt output User Support cutadapt , quality-control , best-of-the-forum	16	6024	November 2, 2020
How can I be sure of the accuracy/confidence of QIIME2 PICRUSt2 predicted metabolic pathways? General Discussion picrust , best-of-the-forum	3	2731	October 2, 2020
Question about ASVs that are taxonomically classified as "Unassigned" despite of having a high confidence value (e.g. >0.7) User Support feature-classifier , taxonomy , best-of-the-forum	3	2000	September 24, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	1	1242	August 10, 2020
How to validate my results General Discussion best-of-the-forum	2	639	July 27, 2020
Linear Mixed Effect Intrepretation Help User Support best-of-the-forum	3	1771	June 24, 2020
taxonomy analyses, differential abundance General Discussion best-of-the-forum	8	4822	June 20, 2020
Possible Analysis Pipeline for Ion Torrent 16S Metagenomics Kit Data in QIIME2? User Support best-of-the-forum	68	13518	May 11, 2020
Closed Reference OTU picking vs taxonomic annotation General Discussion taxonomy , otus , closed-reference , best-of-the-forum	2	3392	February 4, 2020
Accounting for covariates User Support best-of-the-forum	3	1483	January 17, 2020
Merging, Quality control and overlapping User Support best-of-the-forum	5	5301	November 27, 2019
Taxonomy barplot .csv file for statistical analysis General Discussion best-of-the-forum	1	2093	October 25, 2019
Why shouldn't I just filter based on quality score and throw away those with low scores? User Support dada2 , deblur , quality-filter , best-of-the-forum	2	1089	September 10, 2019
To cluster or not to cluster? General Discussion best-of-the-forum	21	8093	June 4, 2019

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…