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How to deal with possible cross-contamination by a crucial bacteria
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2
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54
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February 8, 2026
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How to perform filtering step for forward read only analysis?
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14
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156
|
January 31, 2026
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Error when collapsing at genus level: Feature IDs missing from taxonomy
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4
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53
|
October 26, 2025
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How to filter or reassign taxonomic names in QIIME 2?
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5
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78
|
October 12, 2025
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DADA2 Filtering Error - Failed to Write Record
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20
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103
|
April 3, 2025
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Corrupted BIOM export?
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3
|
83
|
March 28, 2025
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Error filtering taxa
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4
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61
|
March 25, 2025
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Filter kraken2 reports (e.g. before creating feature-tables with bracken)
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3
|
242
|
October 8, 2024
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Filtering features
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3
|
69
|
September 29, 2024
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filtering data table using CSV file
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9
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121
|
September 3, 2024
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Filter specific ASVs from feature table
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2
|
272
|
April 20, 2024
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DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs)
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4
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372
|
February 29, 2024
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Abnormal high percentage of unclassified bacteria
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2
|
350
|
February 12, 2024
|
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Error message after using ReSCRIPT for filtering for homopolymers
|
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5
|
244
|
December 23, 2023
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Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy
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7
|
1246
|
November 18, 2023
|
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Confirmation on code that removes Homopolymers
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4
|
426
|
September 14, 2023
|
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Error with filter-features-conditionally on picrust2 outputs
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3
|
369
|
August 10, 2023
|
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Getting low feature counts while using dada2 plugin
|
|
18
|
445
|
June 23, 2023
|
|
Filtered OTU table using spike-in mock community to get actual read count
|
|
6
|
409
|
May 21, 2023
|
|
DADA2: losing a lot of reads
|
|
7
|
638
|
April 13, 2023
|
|
LOW percentage of input merged
|
|
5
|
684
|
March 27, 2023
|
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Filtering Samples in a Metabarcoding Dataset by Source Without Restarting the Pipeline
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|
2
|
225
|
March 21, 2023
|
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How to filter out contamination at samples
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|
2
|
713
|
February 18, 2023
|
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Is my DADA2 outputs nomarl?
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|
3
|
437
|
January 16, 2023
|
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Filtering phyloseq object by otu id instead of the target level
|
|
1
|
725
|
October 28, 2022
|
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How to find sample IDs from publicly available fastq.gz
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|
3
|
336
|
August 26, 2022
|
|
Qiime filter feature table by sequences
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|
3
|
633
|
September 19, 2022
|
|
filtering with metada doesn't work
|
|
10
|
696
|
July 29, 2022
|
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silva138 16S database contains eukaryota after filtering
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|
3
|
1765
|
May 30, 2022
|
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Results after taxonomy filtering
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|
2
|
309
|
May 29, 2022
|