Topics tagged filter-features

Topic	Replies	Views	Activity
Identifying Contaminants Before Filtering: E Coli? General Discussion filter-features	3	72	July 16, 2026
How to perform filtering step for forward read only analysis? User Support filtering , feature-table , filter-features , filter-samples	13	211	December 31, 2025
Guidance for feature filtering step of qiime2 User Support feature-table , filter-features	4	154	November 19, 2025
DADA2 Filtering Error - Failed to Write Record Technical Support dada2 , filtering , filter-features , qiime2	17	137	March 3, 2025
CFProperty ListCreateFrom XMLData: Old-style plist parser: missing semicolon in dictionary Technical Support filter-features	3	147	February 10, 2025
Filtering features User Support filtering , taxonomy , filter-features	2	78	August 28, 2024
Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty. User Support phylogeny , filter-features	2	50	July 15, 2024
I lost 90% features after removing singletons by '--p-min-samples 2' User Support feature-table , filter-features	5	329	June 7, 2024
how to decide feature tabel filtering min,max and sampling depth values User Support feature-table , filter-features	1	201	January 29, 2024
Problem with filter-seqs: Filter features from sequences User Support filter-features	4	352	November 30, 2023
Getting low feature counts while using dada2 plugin User Support dada2 , filtering , feature-table , filter-features	15	466	May 23, 2023
How to filter out contamination at samples User Support filtering , taxonomy , feature-table , filter-features	1	721	January 18, 2023
a sample with low reads General Discussion filter-features	2	454	September 28, 2022
Remove features based on per-sample frequency User Support filter-features	2	303	August 29, 2022
How to find sample IDs from publicly available fastq.gz General Discussion filtering , filter-features	3	345	August 26, 2022
filter samples based on one sample User Support filter-features	1	298	May 22, 2022
Every feature in only 1 sample Technical Support dada2 , feature-classifier , feature-table , relative-frequency , filter-features , table	1	612	March 24, 2022
Filter-features and important steps for core-features User Support core-features , filter-features	6	1219	December 17, 2021
Filtering multiple taxa with exact substrings User Support taxonomy , filter-features	1	624	November 24, 2021
Filter features conditionally not working as intended Technical Support feature-table , filter-features	5	1168	August 29, 2021
An error was encountered while running qiime feature-table filter-seqs User Support feature-table , vsearch , filter-features	2	766	April 10, 2021
Issue filtering multiple specific taxa out of feature table User Support filtering , filter-features	4	1632	February 16, 2021
differencial abundance with ANCOM Technical Support dada2 , filtering , demux , feature-classifier , taxonomy , feature-table , filter-features	3	788	February 12, 2021
How to obtain machine-readable total observation counts? Technical Support feature-table , filter-features	2	776	September 27, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	1	1229	August 10, 2020
Filter taxa/samples and re-running alpha and beta diversity General Discussion filter-features , filter-samples	5	1340	June 8, 2020
Sampling depth - Is my sampling depth ideal General Discussion filter-features , filter-samples	5	4161	May 14, 2020
Filter-features without removing samples with zero counts from the output for posterior taxa-plots User Support filter-features	1	499	May 4, 2020
Filter to identify unique ASVs in one sample compared to another collected from the same person! General Discussion filter-features	1	658	April 24, 2020
Removal of Chloroplast and Mitochondria (Verification of pipeline) User Support taxonomy , filter-features	4	4132	July 30, 2019