Topics tagged best-of-the-forum

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" General Discussion best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	2	7245	February 27, 2020
NovaSeq and Dada2 incompatibility. General Discussion dada2 , tutorial , best-of-the-forum	10	2259	August 6, 2024
Can we use extracted reference reads to calculate expected amplicon sizes? General Discussion best-of-the-forum	7	2400	April 15, 2024
Using multiple 16s variable regions for analysis User Support best-of-the-forum	7	365	February 24, 2024
Alpha and Beta Diversity Explanations and Commands Tutorials tutorial , beta , alpha , best-of-the-forum	16	83879	April 17, 2023
modeling bacterial features as indepedent variables General Discussion best-of-the-forum	4	791	March 23, 2023
Chao1 and Shannon negatively correlated General Discussion best-of-the-forum	1	4110	July 21, 2022
Is it best to work on abundance tables of ASVs or taxa? General Discussion taxonomy , feature-table , 16s , asv , best-of-the-forum	5	1363	May 23, 2022
How to determine the components of PC1? User Support pcoa , unifrac , best-of-the-forum	2	919	March 29, 2022
Discussion: methods for removing contaminants and cross-talk General Discussion best-of-the-forum	20	6995	November 14, 2021
Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R Tutorials best-of-the-forum	17	82885	December 16, 2020
Differential abundance analysis (e.g. ANCOM) for paired samples (e.g. normal tissue vs. tumor tissue from cancer patients) User Support ancom , best-of-the-forum	10	5155	January 12, 2021
first-distance and first-distance-baseline-0 User Support best-of-the-forum	8	1047	January 5, 2021
Songbird on paired samples Community Plugin Support q2-songbird , best-of-the-forum	11	1690	November 20, 2020
Help with understanding beta diversity calculation + results User Support best-of-the-forum	9	3445	December 4, 2020
q2-cutadapt output User Support cutadapt , quality-control , best-of-the-forum	27	5362	December 4, 2020
How can I be sure of the accuracy/confidence of QIIME2 PICRUSt2 predicted metabolic pathways? General Discussion picrust , best-of-the-forum	3	2275	October 2, 2020
Question about ASVs that are taxonomically classified as "Unassigned" despite of having a high confidence value (e.g. >0.7) User Support feature-classifier , taxonomy , best-of-the-forum	6	1780	October 26, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	4	1176	September 12, 2020
How to validate my results General Discussion best-of-the-forum	2	593	July 27, 2020
Linear Mixed Effect Intrepretation Help User Support best-of-the-forum	4	1620	July 25, 2020
taxonomy analyses, differential abundance General Discussion best-of-the-forum	8	4435	June 20, 2020
Possible Analysis Pipeline for Ion Torrent 16S Metagenomics Kit Data in QIIME2? User Support best-of-the-forum	69	12126	June 12, 2020
Closed Reference OTU picking vs taxonomic annotation General Discussion taxonomy , otus , closed-reference , best-of-the-forum	2	3109	February 4, 2020
Accounting for covariates User Support best-of-the-forum	4	1392	February 18, 2020
Merging, Quality control and overlapping User Support best-of-the-forum	6	4755	December 28, 2019
Taxonomy barplot .csv file for statistical analysis General Discussion best-of-the-forum	1	2021	October 25, 2019
Why shouldn't I just filter based on quality score and throw away those with low scores? User Support dada2 , deblur , quality-filter , best-of-the-forum	3	984	October 12, 2019
To cluster or not to cluster? General Discussion best-of-the-forum	22	7268	July 18, 2019
comparison of Illumina vs. PacBio amplicon sequencing vs. metagenome sequencing General Discussion best-of-the-forum	1	1393	June 5, 2019

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…