Topics tagged best-of-the-forum

Topic	Replies	Views	Activity
Frequent Questions and "Best of the QIIME 2 Forum" General Discussion best-of-the-forum The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…	3	1593	February 27, 2020
Differential abundance analysis (e.g. ANCOM) for paired samples (e.g. normal tissue vs. tumor tissue from cancer patients) User Support ancom , best-of-the-forum	11	273	January 12, 2021
first-distance and first-distance-baseline-0 User Support best-of-the-forum	9	130	January 5, 2021
Songbird on paired samples Community Plugin Support q2-songbird , best-of-the-forum	12	386	November 20, 2020
Help with understanding beta diversity calculation + results User Support best-of-the-forum	10	209	December 4, 2020
q2-cutadapt output User Support cutadapt , quality-control , best-of-the-forum	28	342	December 4, 2020
How can I be sure of the accuracy/confidence of QIIME2 PICRUSt2 predicted metabolic pathways? General Discussion picrust , best-of-the-forum	4	240	October 2, 2020
Question about ASVs that are taxonomically classified as "Unassigned" despite of having a high confidence value (e.g. >0.7) User Support feature-classifier , taxonomy , best-of-the-forum	7	174	October 26, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	5	144	September 12, 2020
How to validate my results General Discussion best-of-the-forum	3	121	July 27, 2020
taxonomy analyses, differential abundance General Discussion best-of-the-forum	9	636	June 20, 2020
Possible Analysis Pipeline for Ion Torrent 16S Metagenomics Kit Data in QIIME2? User Support best-of-the-forum	70	2512	June 12, 2020
Accounting for covariates User Support best-of-the-forum	5	294	February 18, 2020
Merging, Quality control and overlapping User Support best-of-the-forum	7	353	December 28, 2019
Taxonomy barplot .csv file for statistical analysis General Discussion best-of-the-forum	2	494	October 25, 2019
Why shouldn't I just filter based on quality score and throw away those with low scores? User Support dada2 , deblur , quality-filter , best-of-the-forum	4	261	October 12, 2019
Can we use extracted reference reads to calculate expected amplicon sizes? General Discussion best-of-the-forum	6	586	August 13, 2019
To cluster or not to cluster? General Discussion best-of-the-forum	23	2418	July 18, 2019
comparison of Illumina vs. PacBio amplicon sequencing vs. metagenome sequencing General Discussion best-of-the-forum	2	448	June 5, 2019
is there information in provenance on the classifier file used? User Support feature-classifier , taxonomy , best-of-the-forum	11	423	July 2, 2019
Discussion: methods for removing contaminants and cross-talk General Discussion best-of-the-forum	20	2096	January 17, 2019
Deep sequencing User Support best-of-the-forum	4	1684	April 30, 2018

Frequent Questions and "Best of the QIIME 2 Forum"

best-of-the-forum

The following is a list of frequently asked questions on the forum, with answers, to serve as a point of reference for forum users to quickly find answers, or for forum users and moderators to use as a reference when hel…