Topics tagged otus

Topic	Replies	Views	Activity
low proportion of identified ITS - OTU features Technical Support dada2 , feature-classifier , taxonomy , otus	3	64	April 28, 2025
dbotu_q2 plugin issue: appears to install but plugin not found and won't execute Library Plugin Support otus	5	131	April 17, 2024
I want to get the mean and median abundance or relative abundance for each bacteria species from OTU tables User Support dada2 , otus , numpy , qiime2r	8	422	January 14, 2024
Many questions about clustering in the qiime vsearch plugin User Support feature-classifier , taxonomy , otus , sample-classifier	10	898	January 11, 2024
Alpha and Beta Diversity Explanations and Commands https://forum.qiime2.org/t/alpha-and-beta-diversity-explanations-and-commands/2282 User Support otus , diversity , alpha	9	446	January 8, 2024
Converting ASVs from DADA2 to OTUs User Support dada2 , otus , asv	12	778	November 10, 2023
OTU vs ASV Analysis User Support dada2 , otus , asv	4	808	October 13, 2023
ASV or OTU ? What do I have? User Support otus , alpha , asv	4	462	October 2, 2023
Relative Abundance considering OTU General Discussion taxonomy , otus , relative-frequency	9	1216	August 9, 2023
How to build an OTU table User Support otus	2	1357	July 28, 2023
How to know which sequences are included in an OTU? User Support otus	6	504	June 2, 2023
About OTU clustering of fasta files Technical Support otus , fasta	4	403	May 28, 2023
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	4	377	April 30, 2023
If is normal that the exaggerated different between the numbers of ASV and OTU using the same sequencing data? General Discussion dada2 , otus , rarefaction	1	504	January 10, 2023
Qiime 2 version of Qiime1 "pick_rep_set.py" for picking representative OTU sequences Technical Support taxonomy , phylogeny , otus	4	381	December 23, 2022
REsCRIPt dereplication leads to very different result User Support taxonomy , otus , diversity , rescript	4	426	October 31, 2022
Why the total number of observed otus does not agree with the total number of otus? General Discussion otus	1	316	July 26, 2022
is it realy OTUs table?? Other Bioinformatics Tools otus	1	313	July 25, 2022
otus and greengenes? User Support otus	6	652	July 14, 2022
Difference between observed feature and OTU from taxa bar plot csv file User Support otus	6	339	June 9, 2022
observed features vs observed OTUs User Support otus	5	1169	April 17, 2022
Different OTUs detected using different workflow General Discussion otus	3	361	July 28, 2021
Different OTU identifiers between rep-seqs and feature table files User Support otus , vsearch	5	776	July 18, 2021
DADA2 with Cutadapt to have OTU table User Support dada2 , otus , cutadapt	5	993	July 16, 2021
QIIME2 vs QIIME1 taxonomy and OTU clustering Technical Support dada2 , taxonomy , otus , qiime1	3	1183	April 24, 2021
Difficulty with closed reference OTU clustering User Support otus	4	566	April 1, 2021
BIOM conversion to tsv Other Bioinformatics Tools biom , feature-table , otus , tsv	2	1055	November 3, 2020
OTU picking with DADA2 input User Support dada2 , otus , vsearch , asv	3	1285	September 25, 2020
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species" General Discussion otus , alpha , asv	6	3215	June 1, 2020
Tracing the origin of 'Feature ID / OTU ID" name User Support feature-table , otus , ids	2	2437	April 15, 2020