|
low proportion of identified ITS - OTU features
|
|
3
|
64
|
April 28, 2025
|
|
dbotu_q2 plugin issue: appears to install but plugin not found and won't execute
|
|
5
|
131
|
April 17, 2024
|
|
I want to get the mean and median abundance or relative abundance for each bacteria species from OTU tables
|
|
8
|
422
|
January 14, 2024
|
|
Many questions about clustering in the qiime vsearch plugin
|
|
10
|
898
|
January 11, 2024
|
|
Alpha and Beta Diversity Explanations and Commands https://forum.qiime2.org/t/alpha-and-beta-diversity-explanations-and-commands/2282
|
|
9
|
446
|
January 8, 2024
|
|
Converting ASVs from DADA2 to OTUs
|
|
12
|
778
|
November 10, 2023
|
|
OTU vs ASV Analysis
|
|
4
|
808
|
October 13, 2023
|
|
ASV or OTU ? What do I have?
|
|
4
|
462
|
October 2, 2023
|
|
Relative Abundance considering OTU
|
|
9
|
1216
|
August 9, 2023
|
|
How to build an OTU table
|
|
2
|
1357
|
July 28, 2023
|
|
How to know which sequences are included in an OTU?
|
|
6
|
504
|
June 2, 2023
|
|
About OTU clustering of fasta files
|
|
4
|
403
|
May 28, 2023
|
|
issues moving between greengenes classification and diversity metrics
|
|
4
|
377
|
April 30, 2023
|
|
If is normal that the exaggerated different between the numbers of ASV and OTU using the same sequencing data?
|
|
1
|
504
|
January 10, 2023
|
|
Qiime 2 version of Qiime1 "pick_rep_set.py" for picking representative OTU sequences
|
|
4
|
381
|
December 23, 2022
|
|
REsCRIPt dereplication leads to very different result
|
|
4
|
426
|
October 31, 2022
|
|
Why the total number of observed otus does not agree with the total number of otus?
|
|
1
|
316
|
July 26, 2022
|
|
is it realy OTUs table??
|
|
1
|
313
|
July 25, 2022
|
|
otus and greengenes?
|
|
6
|
652
|
July 14, 2022
|
|
Difference between observed feature and OTU from taxa bar plot csv file
|
|
6
|
339
|
June 9, 2022
|
|
observed features vs observed OTUs
|
|
5
|
1169
|
April 17, 2022
|
|
Different OTUs detected using different workflow
|
|
3
|
361
|
July 28, 2021
|
|
Different OTU identifiers between rep-seqs and feature table files
|
|
5
|
776
|
July 18, 2021
|
|
DADA2 with Cutadapt to have OTU table
|
|
5
|
993
|
July 16, 2021
|
|
QIIME2 vs QIIME1 taxonomy and OTU clustering
|
|
3
|
1183
|
April 24, 2021
|
|
Difficulty with closed reference OTU clustering
|
|
4
|
566
|
April 1, 2021
|
|
BIOM conversion to tsv
|
|
2
|
1055
|
November 3, 2020
|
|
OTU picking with DADA2 input
|
|
3
|
1285
|
September 25, 2020
|
|
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
|
|
6
|
3215
|
June 1, 2020
|
|
Tracing the origin of 'Feature ID / OTU ID" name
|
|
2
|
2437
|
April 15, 2020
|