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Inconsistent results with discard untrimmed reads in cutadapt
|
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6
|
32
|
July 10, 2025
|
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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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14
|
295
|
May 18, 2025
|
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Analysing V4/V5 16S rRNA illumina Miseq paired-end reads.
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16
|
185
|
April 19, 2025
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Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity
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2
|
31
|
March 13, 2025
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Which position is best for trimming in a paired-end approach?
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11
|
78
|
February 25, 2025
|
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Comparing amplicon studies that use different primers
|
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9
|
115
|
December 22, 2024
|
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Trimming 5bp in QIIME2 2024.5 Amplicon
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4
|
25
|
December 16, 2024
|
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Error messages after cutadapt, but got trimmed files.
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5
|
65
|
December 8, 2024
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Cut adapt results in empty files
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4
|
34
|
November 19, 2024
|
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One vs two adaptor sequences using cutadapt
|
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4
|
86
|
September 27, 2024
|
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QIIME2 Demultiplexing Sequence
|
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7
|
87
|
October 4, 2024
|
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V3-V4 16s - variable size after merging
|
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7
|
137
|
September 6, 2024
|
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problem with cutadapt trim-single
|
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6
|
98
|
August 22, 2024
|
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Seeking Advice on Primer and Adapter Trimming for MiSeq Amplicon Sequencing Data Using Cutadapt
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0
|
128
|
June 4, 2024
|
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Removal of Illumina Adapters
|
|
1
|
151
|
May 30, 2024
|
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Error during deblur process
|
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8
|
254
|
June 12, 2024
|
|
Cutadapt - trimming adaptor and primer sequences
|
|
3
|
180
|
June 11, 2024
|
|
Missing plugins to load Artifact to run cut adapt
|
|
2
|
115
|
June 8, 2024
|
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Primer show up again after removal using cutadapt in qiime2 DADA2
|
|
11
|
304
|
May 6, 2024
|
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I fell into the swamp of 273bp after trimming adapters and primers through cutadapt...
|
|
8
|
187
|
April 18, 2024
|
|
Pyrosequence work in Qiime2 (Barcode)
|
|
11
|
237
|
April 15, 2024
|
|
PCoA result differed based on primer trimming methods
|
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2
|
163
|
April 7, 2024
|
|
Pyrosequence work in Qiime2
|
|
2
|
131
|
February 28, 2024
|
|
Preparing mixed orientation reads for dada2
|
|
6
|
718
|
February 27, 2024
|
|
Demultiplexing reads without sample barcode metadata
|
|
2
|
283
|
November 20, 2023
|
|
Plugin error from cutadapt (qiime 2023.7.0)
|
|
6
|
294
|
November 15, 2023
|
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Remove Illumina universal adapters
|
|
8
|
2743
|
November 6, 2023
|
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How do I check adapter and primer presence in sequences?
|
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7
|
3470
|
August 17, 2023
|
|
The primers are still present after cutadpt
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5
|
723
|
August 5, 2023
|
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help with cutadapt demux-paired
|
|
2
|
566
|
July 3, 2023
|
