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Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity
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1
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9
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February 10, 2025
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Which position is best for trimming in a paired-end approach?
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10
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61
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January 24, 2025
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Comparing amplicon studies that use different primers
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9
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74
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December 22, 2024
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Trimming 5bp in QIIME2 2024.5 Amplicon
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4
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18
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December 16, 2024
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Error messages after cutadapt, but got trimmed files.
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5
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44
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December 8, 2024
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Cut adapt results in empty files
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4
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20
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November 19, 2024
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One vs two adaptor sequences using cutadapt
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4
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73
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September 27, 2024
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QIIME2 Demultiplexing Sequence
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7
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49
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October 4, 2024
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V3-V4 16s - variable size after merging
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7
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105
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September 6, 2024
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problem with cutadapt trim-single
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6
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88
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August 22, 2024
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Seeking Advice on Primer and Adapter Trimming for MiSeq Amplicon Sequencing Data Using Cutadapt
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0
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105
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June 4, 2024
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Removal of Illumina Adapters
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1
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122
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May 30, 2024
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Error during deblur process
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8
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238
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June 12, 2024
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Cutadapt - trimming adaptor and primer sequences
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3
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168
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June 11, 2024
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Missing plugins to load Artifact to run cut adapt
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2
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107
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June 8, 2024
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Primer show up again after removal using cutadapt in qiime2 DADA2
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11
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269
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May 6, 2024
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I fell into the swamp of 273bp after trimming adapters and primers through cutadapt...
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8
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184
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April 18, 2024
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Pyrosequence work in Qiime2 (Barcode)
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11
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207
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April 15, 2024
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PCoA result differed based on primer trimming methods
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2
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162
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April 7, 2024
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Pyrosequence work in Qiime2
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2
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128
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February 28, 2024
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Preparing mixed orientation reads for dada2
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6
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653
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February 27, 2024
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Demultiplexing reads without sample barcode metadata
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2
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275
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November 20, 2023
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Plugin error from cutadapt (qiime 2023.7.0)
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6
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291
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November 15, 2023
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Remove Illumina universal adapters
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8
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2244
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November 6, 2023
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How do I check adapter and primer presence in sequences?
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7
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3003
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August 17, 2023
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The primers are still present after cutadpt
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5
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680
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August 5, 2023
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help with cutadapt demux-paired
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2
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543
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July 3, 2023
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Demultiplexing and Trimming Adapters from Reads with q2-cutadapt
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19
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50031
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June 1, 2023
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qiime cutadapt demux failed to exclude reads with fake barcodes in the middle
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2
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201
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June 28, 2023
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How to remove primer and index from demux.qza
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16
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1123
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June 12, 2023
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