DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages
|
|
1
|
13
|
May 22, 2025
|
QIIME2 microbiome analysis and python version
|
|
2
|
54
|
March 29, 2025
|
Invalid value for 'emp-paired-end-sequences.qza'
|
|
4
|
23
|
April 6, 2025
|
Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom)
|
|
8
|
103
|
April 1, 2025
|
BadZipFile: how to find the corrupted file?
|
|
5
|
51
|
March 29, 2025
|
Issue importing Paired end sequences with quality and interactive quality plot
|
|
2
|
15
|
March 20, 2025
|
Golay Barcodes not being detected with demux
|
|
5
|
38
|
March 8, 2025
|
Which position is best for trimming in a paired-end approach?
|
|
11
|
74
|
February 25, 2025
|
[demux summarize] Invalid value for '--i-data': [Errno 9] Bad file descriptor
|
|
9
|
18
|
December 10, 2024
|
demux for fastq files that don't have barcode in them?
|
|
4
|
25
|
November 30, 2024
|
Dada2 unable to run
|
|
2
|
32
|
November 30, 2024
|
Interpreting Interactive Quality Plot
|
|
2
|
59
|
November 14, 2024
|
Merging after denoising step
|
|
15
|
210
|
October 12, 2024
|
QIIME2 Demultiplexing Sequence
|
|
7
|
64
|
October 4, 2024
|
Plugin error from demux:Value must be a nonnegative integer or None
|
|
2
|
17
|
September 20, 2024
|
Modification of demux emp-paired golay-error-correction
|
|
8
|
243
|
July 17, 2024
|
quality-filter q-score on joined demux ignoring reverse reads
|
|
2
|
75
|
May 26, 2024
|
qiime demux emp-paired Invalid value for '--i-seqs': Expected an artifact of at least type
|
|
4
|
162
|
May 6, 2024
|
data demultiplexing error
|
|
12
|
293
|
May 13, 2024
|
Error in dumx.qza visualization (converting it into demux.qzv)
|
|
2
|
176
|
April 20, 2024
|
demux emp-paired killed after 2-3 days running
|
|
4
|
124
|
March 30, 2024
|
Demux and subsampling
|
|
7
|
235
|
March 25, 2024
|
Problem processing Element AVITI 16S data (most discarded despite high phred scores)
|
|
22
|
865
|
March 26, 2024
|
Demux results in missing samples from 3 separate libraries
|
|
5
|
153
|
March 15, 2024
|
Abnormal high percentage of unclassified bacteria
|
|
2
|
319
|
February 12, 2024
|
Plugin error from demux--AttributeError: 'NoneType' object has no attribute 'strip'
|
|
6
|
293
|
January 28, 2024
|
Is there a multiple_split_libraries.py in QIIME2
|
|
5
|
144
|
January 6, 2024
|
demux visualization
|
|
2
|
178
|
December 31, 2023
|
Low read abundance after demultiplexing
|
|
10
|
220
|
December 19, 2023
|
Demultiplexing reads without sample barcode metadata
|
|
2
|
282
|
November 20, 2023
|