Understanding min sequence length of F and R/ quality scores and how it is impacting dada2 downstream
|
|
7
|
32
|
May 28, 2025
|
dada2-paired giving return code 1
|
|
6
|
23
|
May 27, 2025
|
Denoise pair returning DataFrame' object has no attribute 'map' error
|
|
3
|
16
|
May 26, 2025
|
DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages
|
|
1
|
13
|
May 22, 2025
|
Error with DADA2 with sequences of different runs.
|
|
3
|
40
|
May 21, 2025
|
Can trimming and dada 2
|
|
3
|
27
|
May 19, 2025
|
Low percentage of non-quimeric reads after dada2
|
|
3
|
25
|
May 14, 2025
|
Alpha diversity with filtered raw data or unfiltered raw data
|
|
1
|
49
|
April 24, 2025
|
Losing a lot of reads during merging
|
|
4
|
60
|
May 19, 2025
|
QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
|
|
14
|
267
|
May 18, 2025
|
Questions about the running time of qiime dada2 denoise-ccs
|
|
4
|
42
|
May 13, 2025
|
trunc length setting in dada2
|
|
2
|
10
|
May 12, 2025
|
dada2 failed while running nextseq data
|
|
13
|
110
|
May 12, 2025
|
How can I perform learnErrors on a subset of reads?
|
|
3
|
34
|
April 7, 2025
|
alpha and beta diversity
|
|
2
|
28
|
April 6, 2025
|
low proportion of identified ITS - OTU features
|
|
3
|
54
|
April 28, 2025
|
Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
|
|
8
|
95
|
March 27, 2025
|
dada2 denoise-ccs most reads were filtered out
|
|
10
|
88
|
April 26, 2025
|
Expose more options for DADA2 mergePairs function
|
|
1
|
45
|
March 18, 2025
|
Am I overthinking this? Dada2 and Greengenes2
|
|
6
|
80
|
April 18, 2025
|
Unable to find all taxon as a result of taxanomic analysis
|
|
3
|
26
|
April 13, 2025
|
How to download seven-number-summaries TSV directly
|
|
1
|
17
|
March 7, 2025
|
DADA2 Denoise Single vs Paired Requirements
|
|
4
|
47
|
April 7, 2025
|
DADA2 : low non chimeric read counts after denoising step , --p-min-fold-parent-over-abundance
|
|
12
|
101
|
April 7, 2025
|
DADA2 Filtering Error - Failed to Write Record
|
|
20
|
56
|
April 3, 2025
|
Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom)
|
|
8
|
103
|
April 1, 2025
|
choosing of sampling depth
|
|
7
|
77
|
February 28, 2025
|
How to Analyzing Multi-Run Sequencing Data in QIIME2 with Minimal Batch Effects
|
|
7
|
66
|
March 31, 2025
|
Animals gene family
|
|
1
|
17
|
February 26, 2025
|
tutorial for merging different sequencing data in qiime2
|
|
6
|
56
|
February 26, 2025
|