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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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13
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178
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April 17, 2025
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Questions about the running time of qiime dada2 denoise-ccs
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3
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30
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April 11, 2025
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trunc length setting in dada2
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1
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3
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April 11, 2025
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dada2 failed while running nextseq data
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12
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90
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April 10, 2025
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How can I perform learnErrors on a subset of reads?
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3
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31
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April 7, 2025
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alpha and beta diversity
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2
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20
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April 6, 2025
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low proportion of identified ITS - OTU features
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2
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45
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March 28, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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78
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March 27, 2025
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dada2 denoise-ccs most reads were filtered out
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9
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80
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March 25, 2025
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Expose more options for DADA2 mergePairs function
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1
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41
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March 18, 2025
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Am I overthinking this? Dada2 and Greengenes2
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5
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58
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March 17, 2025
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Unable to find all taxon as a result of taxanomic analysis
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3
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25
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April 13, 2025
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How to download seven-number-summaries TSV directly
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1
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12
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March 7, 2025
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DADA2 Denoise Single vs Paired Requirements
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4
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41
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April 7, 2025
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DADA2 : low non chimeric read counts after denoising step , --p-min-fold-parent-over-abundance
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12
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80
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April 7, 2025
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DADA2 Filtering Error - Failed to Write Record
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20
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52
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April 3, 2025
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Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom)
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8
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98
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April 1, 2025
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choosing of sampling depth
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7
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73
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February 28, 2025
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How to Analyzing Multi-Run Sequencing Data in QIIME2 with Minimal Batch Effects
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7
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65
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March 31, 2025
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Animals gene family
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1
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15
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February 26, 2025
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tutorial for merging different sequencing data in qiime2
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6
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52
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February 26, 2025
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The question of installing qiime2-amplicon-2024.10
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3
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69
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March 27, 2025
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Plugin error from dada2 in jupyter notebook
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2
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27
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March 24, 2025
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I end up with only 3% of my data after denoising with dada2
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7
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75
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March 21, 2025
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Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification
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4
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104
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March 21, 2025
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the pooled option to the --p-chimera-method parameter in q2-dada2
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2
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31
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March 10, 2025
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Changing one parameter to improve the DADA2 filtering percentage for CCS sequences by 50%? I'm not sure if that's feasible.
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8
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62
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March 2, 2025
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Help!! With 18S Dada2 'Filtering Error in names(answer)'
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3
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25
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February 25, 2025
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Help with troubleshooting dada2 denoise-paired error. [NAs produced by integer overflow...is there a fix?]
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6
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39
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February 21, 2025
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Questions about denoising-CCS with Dada2
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5
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84
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February 14, 2025
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