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Trained classifier output not found
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4
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23
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September 2, 2025
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16S CCS without primers: how to skip --p-front/--p-adapter in denoise-ccs?
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3
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19
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August 26, 2025
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Percentage of reads discarded after running DADA2 on NextSeq data
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1
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25
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August 25, 2025
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Effect of primer removal on chimera detection in DADA2
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10
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104
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August 25, 2025
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Shall I need to remove ASV with prevelance in one sample?
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4
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34
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August 8, 2025
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Why is there a size difference between my PCR product (~400 bp) and the final representative sequence (313 bp)?
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4
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29
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July 22, 2025
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Less percentage of reads merged in qiime-DADA2 even with enough overlapping length present.
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7
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55
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August 11, 2025
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dada2 error: rcpp/SparseArray
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2
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20
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August 10, 2025
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PICRUST2 Input Data setting
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1
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33
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July 8, 2025
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Please help interpreting demux data
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2
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40
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July 18, 2025
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Minimum length of read in ASV (DADA2)
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6
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76
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July 9, 2025
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Shotgun sequencing and Trimming
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2
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25
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June 3, 2025
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Understanding min sequence length of F and R/ quality scores and how it is impacting dada2 downstream
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15
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110
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July 4, 2025
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Denoise pair returning DataFrame' object has no attribute 'map' error
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6
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54
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July 4, 2025
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dada2-paired giving return code 1
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7
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41
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June 28, 2025
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DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages
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2
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20
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June 23, 2025
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Error with DADA2 with sequences of different runs.
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4
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52
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June 21, 2025
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Can trimming and dada 2
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3
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45
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May 19, 2025
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Low percentage of non-quimeric reads after dada2
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4
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45
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June 14, 2025
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Alpha diversity with filtered raw data or unfiltered raw data
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1
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63
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April 24, 2025
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Losing a lot of reads during merging
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4
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80
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May 19, 2025
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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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14
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302
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May 18, 2025
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Questions about the running time of qiime dada2 denoise-ccs
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4
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61
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May 13, 2025
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trunc length setting in dada2
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2
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13
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May 12, 2025
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dada2 failed while running nextseq data
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13
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187
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May 12, 2025
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How can I perform learnErrors on a subset of reads?
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3
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38
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April 7, 2025
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alpha and beta diversity
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2
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45
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April 6, 2025
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low proportion of identified ITS - OTU features
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3
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63
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April 28, 2025
|
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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140
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March 27, 2025
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dada2 denoise-ccs most reads were filtered out
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10
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105
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April 26, 2025
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