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Please help interpreting demux data
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1
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11
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June 17, 2025
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Minimum length of read in ASV (DADA2)
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5
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39
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June 8, 2025
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Shotgun sequencing and Trimming
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2
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17
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June 3, 2025
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Understanding min sequence length of F and R/ quality scores and how it is impacting dada2 downstream
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14
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73
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June 3, 2025
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Denoise pair returning DataFrame' object has no attribute 'map' error
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5
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33
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June 2, 2025
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dada2-paired giving return code 1
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6
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31
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May 27, 2025
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DADA2 fails silently on SLURM cluster (QIIME2 2024.10) — No .qza outputs, no error messages
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1
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18
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May 22, 2025
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Error with DADA2 with sequences of different runs.
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3
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48
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May 21, 2025
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Can trimming and dada 2
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3
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34
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May 19, 2025
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Low percentage of non-quimeric reads after dada2
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4
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40
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June 14, 2025
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Alpha diversity with filtered raw data or unfiltered raw data
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1
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53
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April 24, 2025
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Losing a lot of reads during merging
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4
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69
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May 19, 2025
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QIIME 2 Meta-Analysis of Rhizosphere Microbiome with Mixed V3-V4/V4 Data: Best Practices for Downstream Analysis
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14
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284
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May 18, 2025
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Questions about the running time of qiime dada2 denoise-ccs
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4
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48
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May 13, 2025
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trunc length setting in dada2
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2
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12
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May 12, 2025
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dada2 failed while running nextseq data
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13
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128
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May 12, 2025
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How can I perform learnErrors on a subset of reads?
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3
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35
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April 7, 2025
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alpha and beta diversity
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2
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31
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April 6, 2025
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low proportion of identified ITS - OTU features
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3
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56
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April 28, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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99
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March 27, 2025
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dada2 denoise-ccs most reads were filtered out
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10
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93
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April 26, 2025
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Expose more options for DADA2 mergePairs function
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1
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49
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March 18, 2025
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Am I overthinking this? Dada2 and Greengenes2
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6
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86
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April 18, 2025
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Unable to find all taxon as a result of taxanomic analysis
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3
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27
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April 13, 2025
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How to download seven-number-summaries TSV directly
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1
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19
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March 7, 2025
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DADA2 Denoise Single vs Paired Requirements
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4
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53
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April 7, 2025
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DADA2 : low non chimeric read counts after denoising step , --p-min-fold-parent-over-abundance
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12
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113
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April 7, 2025
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DADA2 Filtering Error - Failed to Write Record
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20
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57
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April 3, 2025
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Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom)
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8
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105
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April 1, 2025
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choosing of sampling depth
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7
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79
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February 28, 2025
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