Chimera removal taking VERY LONG time
|
|
1
|
23
|
March 18, 2024
|
I fell into the swamp of 273bp after trimming adapters and primers through cutadapt...
|
|
7
|
58
|
March 18, 2024
|
Analysis with DADA2
|
|
3
|
35
|
March 18, 2024
|
Dada2 Parameters choice
|
|
9
|
45
|
March 13, 2024
|
dada2 deniose-paired never finishes; too many samples or too big input?
|
|
4
|
67
|
March 13, 2024
|
very short sequence length on demux
|
|
9
|
78
|
March 7, 2024
|
PCoA result differed based on primer trimming methods
|
|
1
|
47
|
March 7, 2024
|
'--p-chimera-method none' Still removing almost all reads due to being chimeric - 16s PacBio full length
|
|
5
|
108
|
March 7, 2024
|
Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1) [removing chimeras?]
|
|
11
|
84
|
March 5, 2024
|
dada2 denoise-ccs, how to run without adapter
|
|
2
|
63
|
March 2, 2024
|
16s Pacbio analysis issue
|
|
9
|
94
|
March 1, 2024
|
Dada2 and big dataset - optimize or/and split?
|
|
8
|
109
|
February 28, 2024
|
q2-dada2 and NextSeq amplicon data
|
|
3
|
96
|
February 26, 2024
|
How to handle small number of samples in one run on DADA2
|
|
5
|
69
|
February 25, 2024
|
Understanding DADA2 parameters
|
|
0
|
104
|
February 17, 2024
|
Problem processing Element AVITI 16S data (most discarded despite high phred scores)
|
|
21
|
208
|
February 23, 2024
|
Cannot run denoise pluging
|
|
2
|
71
|
February 23, 2024
|
dada2 denoise-ccs, plugin error [return code 1]
|
|
5
|
84
|
February 21, 2024
|
What is the decent amount and quality of reads for 16s sequencing?
|
|
3
|
55
|
February 19, 2024
|
Merged read lengths on DADA2
|
|
6
|
91
|
March 18, 2024
|
How to create taxa barplot using SRA toolkit on Mac
|
|
2
|
64
|
February 16, 2024
|
NifH database for taxonomic assignment in qiime2
|
|
7
|
176
|
February 9, 2024
|
Odds sequence in Table
|
|
6
|
94
|
March 7, 2024
|
Denoising Error
|
|
5
|
81
|
March 7, 2024
|
Taxonomic classification at subspecies level
|
|
1
|
58
|
February 5, 2024
|
Multiple lane runs on MiSeq of the same samples to get deeper sequencing depth. How to combine?
|
|
2
|
62
|
March 4, 2024
|
How can I set the parameters of feature-classifier extract-reads ?
|
|
1
|
51
|
January 30, 2024
|
DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs)
|
|
4
|
131
|
February 29, 2024
|
error in R plugin in dada2
|
|
2
|
59
|
February 29, 2024
|
can someone help me to decide in denoising this paired end sequence
|
|
6
|
95
|
February 27, 2024
|