Topics tagged feature-table

Topic	Replies	Views	Activity
setting --p-min-frequency User Support feature-table	3	20	January 17, 2025
Not able to find E. coli in my taxonomy file General Discussion taxonomy , feature-table , silva	3	30	December 5, 2024
16S metagenomic analsys Technical Support feature-classifier , taxonomy , feature-table	2	43	December 15, 2024
Dada2 unable to run User Support dada2 , demux , feature-table	2	28	November 30, 2024
Advice on feature table filtering General Discussion dada2 , feature-table	1	18	October 28, 2024
Can i use taxa collapse table for network analysis?? User Support feature-table , network	7	67	November 25, 2024
Removal of Overrepresented sequences from 16S metagenomic sequences User Support dada2 , feature-table , fastqc	11	145	November 1, 2024
Merging after denoising step Technical Support dada2 , demux , feature-classifier , taxonomy , feature-table	15	178	October 12, 2024
Manually Adding Positive Controls to classifier or reference database General Discussion taxonomy , feature-table , rescript	4	493	August 30, 2024
Lost samples after DADA2 Technical Support dada2 , feature-table	4	34	September 7, 2024
.table format conversion to .csv Other Bioinformatics Tools import , feature-table	1	208	July 25, 2024
I am having problems with the Aldex2 effect function. Can anyone help me please? Other Bioinformatics Tools import , feature-table , aldex2	1	59	July 2, 2024
Some taxonomic units, such as class, order, and species, cannot be classified Technical Support feature-classifier , taxonomy , feature-table	3	91	August 2, 2024
Different --p-min-frequency arguments result in different order of importance of the taxonomic groups User Support taxonomy , feature-table	3	75	August 1, 2024
Plugin error from dada2, 16S paired-end fastq files can't generate feature table through dada2 Technical Support dada2 , feature-table	10	114	July 26, 2024
How to interpret the 'qiime feature-table core-features' output User Support feature-table	2	138	July 19, 2024
Merging species derived from spiked species General Discussion dada2 , taxonomy , feature-table	0	93	June 3, 2024
I lost 90% features after removing singletons by '--p-min-samples 2' User Support feature-table , filter-features	6	231	July 8, 2024
Error beta rarefaction plugin Technical Support metadata , feature-table , diversity , beta	7	121	June 28, 2024
Regarding the ASV_ID in the ASV feature table User Support feature-table	3	91	June 18, 2024
Pie chart in R revising to match the segment Other Bioinformatics Tools r , feature-table	3	195	May 17, 2024
How much do i have to trimming the dada2 User Support dada2 , feature-table , trim	4	162	June 14, 2024
Issue with Barplot Visualization: Feature IDs Mismatch. User Support feature-table	3	77	June 13, 2024
Feature table - Sample ID column Technical Support feature-table	5	191	May 26, 2024
Creating feature table without using Dada2 and/or deblur User Support feature-table	2	126	May 11, 2024
Filter specific ASVs from feature table User Support filtering , feature-table	2	195	April 20, 2024
2024.2 bug(?) in feature-table summary output User Support feature-table	2	97	April 7, 2024
Cannot read biom file and feature detail Other Bioinformatics Tools feature-table , phyloseq	7	171	April 6, 2024
feature-table filter-features User Support feature-table	10	355	March 25, 2024
qiime vsearch cluster-features-open-reference issue User Support feature-table , phylogeny , vsearch , qiime2	20	389	March 18, 2024