I'm wondering if there is an easy way to add sequences/taxonomy to a reference database created with QIIME.
I'm working on an eDNA metabarcoding project and want to detect species not present on NCBI's GenBank database. I have tissue samples from those species, and can thus sequence them with the same metabarcoding primers that I'm using for my study.
I would either Sanger sequence them with the metabarcoding primers, or would sequence them on the Illumina platform, then get a consensus sequence for that individual (although that seems a bit overkill).
I could add these directly to GenBank, then use
rescript get-ncbi-data to download them in the proper format. Instead, I'm wondering if there's an easy way to manually add them instead.
Thanks for your help! I'd love to know if there is a standard procedure for this.