Topics tagged silva

Topic	Replies	Views	Activity
How can I set the parameters of feature-classifier extract-reads ? General Discussion dada2 , feature-classifier , silva	1	108	January 30, 2024
Greengenes assigning wrong family to genus level User Support silva , greengenes2 , kraken	9	249	February 26, 2024
Is there a pretrainer classifer for silva 138.1 specifically for 515-806 V4 sequences available on this website? General Discussion taxonomy , silva	1	186	December 15, 2023
"[Errno 28] No space left on device" during Silva-based taxonomy classification Technical Support feature-classifier , silva	17	223	January 16, 2024
Questions about SILVA classifier for v3v4 User Support feature-classifier , silva , rescript	2	201	January 1, 2024
fit classifier naives bayes Silva 138 database Technical Support feature-classifier , silva	6	282	November 23, 2023
how to compare SILVA 138 taxonomy and NCBI taxonomy General Discussion taxonomy , silva , ncbi	3	306	August 22, 2023
extracting amplicon region from alignment User Support feature-classifier , taxonomy , silva	3	302	September 2, 2023
Update of Greengenes General Discussion feature-classifier , silva , greengenes2	1	566	July 10, 2023
classify-sklearn not working without error message Technical Support feature-classifier , silva	3	235	August 6, 2023
Understanding options for assigning taxonomy General Discussion feature-classifier , taxonomy , silva	2	385	May 16, 2023
Taxonomy assignment using Silva 138 General Discussion feature-classifier , taxonomy , silva	17	4406	April 5, 2023
What does mean 'plant-corpus'? General Discussion silva , clawback , readytowear	2	233	March 9, 2023
Could "chloroplast" sequences actually be mitochondrial? User Support silva	2	378	April 9, 2023
problem with feature-classifier classify-consensus-vsearch Technical Support feature-classifier , taxonomy , silva	7	703	March 17, 2023
How to interpret SILVA taxonomic classifications General Discussion taxonomy , silva	2	458	February 9, 2023
Silva classifiers for 548F 806R region General Discussion feature-classifier , silva	1	293	February 8, 2023
Downloading SILVA database General Discussion silva	2	1240	January 30, 2023
Redoing analysis from QIIME 1, Archaea has mostly disappeared User Support taxonomy , silva	5	471	November 24, 2022
Differences of unassigned, unidentified, uncultured taxa. General Discussion taxonomy , silva	1	879	June 9, 2022
silva138 16S database contains eukaryota after filtering User Support filtering , silva	3	1290	May 30, 2022
SILVA 138 assigning incorrect species User Support taxonomy , silva	3	1231	February 5, 2022
Can I use different versions of Silva for taxonomic classification and fragment insertion User Support feature-classifier , taxonomy , silva , fragment-insertion	5	551	January 9, 2022
Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences User Support filtering , metadata , import , demux , feature-classifier , multiplexed , silva , 16s , cutadapt	4	1077	December 24, 2021
Questions about the SILVA 132 QIIME-compatible database, and using it for taxonomic classification of 16S rRNA amplicons User Support feature-classifier , taxonomy , silva	5	2262	September 27, 2021
Silva 132 Database, which taxonomy & reference sequence files to select for classifier training? User Support import , feature-classifier , taxonomy , silva	7	1582	March 23, 2021
ERROR in Downstream analyses (taxonomic) for "Microbiome analyst" Other Bioinformatics Tools feature-classifier , taxonomy , silva	1	865	February 16, 2021
RESCRIPt, SEPP and database correlation Community Plugin Support silva , sepp , rescript	8	1460	February 3, 2021
Invalid character in sequence: b'U' User Support feature-classifier , silva	2	965	February 14, 2021
separate archaea-only database from Silva database User Support import , silva	4	1099	February 8, 2021