Greengenes2 and RESCRIPt
|
|
2
|
18
|
July 9, 2025
|
SILVA 138.1 classifier trained on version 2023.5 and used in 2024.5
|
|
2
|
50
|
July 3, 2025
|
Dealing with Poor Taxonomic Assignments
|
|
6
|
55
|
June 24, 2025
|
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt
|
|
26
|
59919
|
June 23, 2025
|
Request for Pre-trained SILVA V1–V3 Naive Bayes Classifier
|
|
2
|
33
|
June 18, 2025
|
Shotgun sequencing of Fungi - UNITE or KRAKEN2
|
|
1
|
28
|
June 11, 2025
|
SILVA 138.2 classifier
|
|
3
|
109
|
June 28, 2025
|
Classifier code is running without a result
|
|
3
|
22
|
June 21, 2025
|
Classify the phylum of d__Eukaryota;__
|
|
7
|
78
|
June 21, 2025
|
Inconsitent taxonomic classification
|
|
6
|
62
|
June 16, 2025
|
pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!)
|
|
12
|
7124
|
May 9, 2025
|
Greengenes2 2024.09 phylogenetic tree
|
|
7
|
107
|
June 2, 2025
|
How does the sklearn classifier handle ambiguous bases?
|
|
3
|
60
|
May 28, 2025
|
Almost all Reads are unclassified - custom 18S V4 classifier
|
|
13
|
157
|
May 26, 2025
|
[Feature Classifier Error] Not enough value to unpack
|
|
3
|
25
|
May 20, 2025
|
SILVA classifier full lenght vs V3V4
|
|
5
|
140
|
May 17, 2025
|
low proportion of identified ITS - OTU features
|
|
3
|
58
|
April 28, 2025
|
SILVA vs PR2 database using qiime2
|
|
1
|
93
|
March 19, 2025
|
Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases
|
|
7
|
102
|
March 16, 2025
|
Unable to find all taxon as a result of taxanomic analysis
|
|
3
|
27
|
April 13, 2025
|
ASV with missing taxonomic annotation
|
|
2
|
66
|
March 11, 2025
|
Taxonomy file has only 30 features
|
|
3
|
37
|
April 3, 2025
|
Converting Ion Torrent Amplicon Data (V3-V4) to PICRUSt2-Compatible Files (.fna and .biom)
|
|
8
|
108
|
April 1, 2025
|
Identification of Acanthamoeba in 18S rDNA analysis
|
|
1
|
19
|
February 24, 2025
|
Taxonomic Classification Only Reaching Genus Level (6) – Need Help with Deeper Classification
|
|
4
|
134
|
March 21, 2025
|
qiime tools export -- The extraction result is incomplete
|
|
2
|
15
|
March 15, 2025
|
qiime feature-classifier extract-reads successfully extracts different number of reads each time
|
|
4
|
86
|
March 10, 2025
|
classifying sequences-
|
|
7
|
67
|
February 21, 2025
|
The feature-classifier step is too time consuming
|
|
3
|
30
|
February 19, 2025
|
qiime2 feature-classifier fit-classifier-naive-bayes KILLED
|
|
2
|
42
|
February 17, 2025
|