Greengenes2 and RESCRIPt

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Hi everyone!
Has anyone here used RESCRIPt to build a classifier with the Greengenes2 database? If so, can you help me figuring out which data files (from the current repository) are better to use? I’m having trouble matching the taxonomy IDs with the corresponding sequence IDs. Thank you all!

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Hi @spolizzi,

I think all you need to do is go to the Greengenes2 release page, and pull the files that are similar to those outlined here. Then you can proceed with RESCRIPt, etc...

Also see this.

-Mike

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Thank you very much!

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