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About the Other Bioinformatics Tools category
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0
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898
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April 2, 2018
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Using ANCOM-BC instead of aldex2 for differential abundance plots in R
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0
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28
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April 18, 2025
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Error when trying to install qiime2R package
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1
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19
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April 14, 2025
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how to normalize picrust2 predicted results
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1
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39
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May 2, 2025
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biom add-metadata: Error in biom file while adding Taxonomy
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3
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11
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April 7, 2025
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alpha and beta diversity
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2
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25
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April 6, 2025
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MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
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4
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282
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March 25, 2025
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Cutadapt primer removal questions
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4
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38
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March 15, 2025
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Calculating diversity metrics and obtaining phyloseq objects from Humann3 outputs
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0
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34
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March 6, 2025
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Any Chat LLM Supporting Large FASTQ Files and Full Bioinformatics Pipeline?
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3
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45
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April 5, 2025
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Issues with FPKM Calculation in RNA-seq Analysis (Apodemus agrarius)
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1
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14
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February 27, 2025
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Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity
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2
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23
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March 13, 2025
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Impact of number of bootstraps on RDP classification
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2
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49
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March 7, 2025
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Issue with LEfSe Analysis in QIIME2 – IndexError
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1
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30
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January 30, 2025
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physeq and even sampling depth
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1
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420
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January 28, 2024
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MicrobiotaProcess: invalid zip name argument
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1
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27
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January 22, 2025
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Placing filtered ASV sequences into guide tree, per clade
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3
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43
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January 10, 2025
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ggplot2: Relative Abundances Whisker Plot for Individual Phyla across samples
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5
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63
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December 25, 2024
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qiime2R IRanges installation issue
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6
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1208
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December 13, 2024
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Add taxonomy to biom file
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3
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32
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January 10, 2025
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Error messages after cutadapt, but got trimmed files.
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5
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55
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December 8, 2024
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Converting QIIME 2 Output to VALENCIA Format (ASV Taxon and Read Count Table)
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12
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111
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December 5, 2024
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qiime2R unable to access index for repository when downloading
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10
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207
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October 30, 2024
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downloading qiita 10317, and analysis for multiple files
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1
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36
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October 28, 2024
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ANCOM-BC2 paired samples analysis
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2
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226
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September 27, 2024
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Can I use DESEQ2 for differential abundance analysis between two groups of samples without replicates
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1
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194
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August 21, 2024
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Lefse assign a taxa present in more number of samples in another group to represent a group in which it occurs in fewer number of samples
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4
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174
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August 21, 2024
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Statistical analysis from .qza data or .qzv data
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5
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46
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August 20, 2024
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ANCOMBC2 in R Error: Estimation failed for the following covariates:
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2
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115
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September 7, 2024
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IndexError: index 0 is out of bounds for axis 0 with size 0
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6
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1297
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August 2, 2024
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