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About the Other Bioinformatics Tools category
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0
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899
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April 2, 2018
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Abbreviating taxonomic names in R
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4
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74
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October 2, 2025
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Chimera removal dilemma in 16S V3–V4: necessary when using Kraken2/Bracken?
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8
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57
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September 26, 2025
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q2-woltka ( returned non-zero exit status 1 )
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0
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16
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September 22, 2025
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adonis2 model structure: Handling block design (R Vegan)
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1
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54
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September 2, 2025
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negative controls metabarcoing pipeline
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1
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24
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August 24, 2025
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Does anyone know how to construct a phylogenetic tree of all species in the silva138.2 database?
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1
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21
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August 18, 2025
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FUNGuild: Best practice for OTUs with multiple guilds (no primary “|”), and handling “Plant Pathogen” priority?
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0
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36
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August 17, 2025
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Error during the command "redbiom fetch samples"
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2
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62
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August 16, 2025
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Error installing Empress with pip
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3
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41
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September 16, 2025
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cutadapt outside of QIIME2
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1
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22
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August 4, 2025
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Unexpected lack of associations with ancombc2
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11
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175
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July 30, 2025
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help with PRONAME --clusterid fatal error
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2
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19
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August 29, 2025
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Error when creating a phyloseq object
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2
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27
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July 21, 2025
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Can I run QIIME2 on Multiplexed 16S ONT files?
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8
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145
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August 8, 2025
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PICRUST2 Input Data setting
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1
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39
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July 8, 2025
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adonis2 output without metadata information
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6
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96
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June 26, 2025
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qza_to_phyloseq error: otu_table slot is empty
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0
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30
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June 9, 2025
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Highly recommend Visidata for viewing Qiime2 files on the CLI
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2
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34
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June 12, 2025
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QIIME2R importing phyloseq objects differently
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1
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39
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June 9, 2025
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Constructed from biom file
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1
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36
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June 6, 2025
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Changing rooted tree tip lavels from IDs to taxonomy
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2
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36
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June 3, 2025
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Using ANCOM-BC instead of aldex2 for differential abundance plots in R
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1
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57
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May 19, 2025
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Error when trying to install qiime2R package
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2
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29
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May 16, 2025
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how to normalize picrust2 predicted results
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1
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84
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May 2, 2025
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biom add-metadata: Error in biom file while adding Taxonomy
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4
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28
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May 8, 2025
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alpha and beta diversity
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2
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48
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April 6, 2025
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MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
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4
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302
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March 25, 2025
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Cutadapt primer removal questions
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4
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100
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March 15, 2025
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Calculating diversity metrics and obtaining phyloseq objects from Humann3 outputs
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0
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51
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March 6, 2025
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