|
About the Other Bioinformatics Tools category
|
|
0
|
893
|
April 2, 2018
|
|
qiime2R IRanges installation issue
|
|
6
|
1199
|
December 13, 2024
|
|
Add taxonomy to biom file
|
|
2
|
24
|
December 10, 2024
|
|
Error messages after cutadapt, but got trimmed files.
|
|
5
|
34
|
December 8, 2024
|
|
Converting QIIME 2 Output to VALENCIA Format (ASV Taxon and Read Count Table)
|
|
12
|
80
|
December 5, 2024
|
|
qiime2R unable to access index for repository when downloading
|
|
10
|
145
|
October 30, 2024
|
|
downloading qiita 10317, and analysis for multiple files
|
|
1
|
21
|
October 28, 2024
|
|
ANCOM-BC2 paired samples analysis
|
|
2
|
100
|
September 27, 2024
|
|
Can I use DESEQ2 for differential abundance analysis between two groups of samples without replicates
|
|
1
|
105
|
August 21, 2024
|
|
Lefse assign a taxa present in more number of samples in another group to represent a group in which it occurs in fewer number of samples
|
|
4
|
93
|
August 21, 2024
|
|
Statistical analysis from .qza data or .qzv data
|
|
5
|
34
|
August 20, 2024
|
|
ANCOMBC2 in R Error: Estimation failed for the following covariates:
|
|
2
|
67
|
September 7, 2024
|
|
MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
|
|
2
|
245
|
August 2, 2024
|
|
IndexError: index 0 is out of bounds for axis 0 with size 0
|
|
6
|
987
|
August 2, 2024
|
|
make_taxa_barplot prune taxa
|
|
5
|
36
|
July 29, 2024
|
|
How to get the KO count from predicted functional profiles
|
|
1
|
128
|
July 28, 2024
|
|
Open Tree of Life in Qiime2
|
|
1
|
317
|
July 28, 2024
|
|
How to select differential abundant ASVs/ Keggs from ancombc2 for enrichment analysis
|
|
3
|
778
|
July 28, 2024
|
|
Strange adapters question before running QIIME2
|
|
1
|
55
|
July 28, 2024
|
|
csvlens, for interacting with metadata (and other csv/tsv on the command line)
|
|
1
|
211
|
July 25, 2024
|
|
Adonis2 (physeq) and Qiime2 beta-significance producing very different results
|
|
2
|
74
|
July 25, 2024
|
|
Duplicate of KOs in function prediction with picrust2 or tax4fun
|
|
1
|
154
|
July 25, 2024
|
|
picrust2 nsti table
|
|
1
|
130
|
July 25, 2024
|
|
.table format conversion to .csv
|
|
1
|
208
|
July 25, 2024
|
|
converting .bam to .fastq
|
|
3
|
69
|
July 9, 2024
|
|
Training Silva 138 data base to use in qiime1
|
|
1
|
46
|
July 3, 2024
|
|
I am having problems with the Aldex2 effect function. Can anyone help me please?
|
|
1
|
57
|
July 2, 2024
|
|
Rename sample IDs within fastq.gz files
|
|
4
|
283
|
June 29, 2024
|
|
Creating a relative abundance bar plot in R with qiime2 data
|
|
5
|
803
|
July 27, 2024
|
|
Failure to download BUSCO DB
|
|
3
|
151
|
July 21, 2024
|
