|
About the Other Bioinformatics Tools category
|
|
0
|
897
|
April 2, 2018
|
|
Using ANCOM-BC instead of aldex2 for differential abundance plots in R
|
|
0
|
22
|
April 18, 2025
|
|
Error when trying to install qiime2R package
|
|
1
|
16
|
April 14, 2025
|
|
how to normalize picrust2 predicted results
|
|
0
|
37
|
April 1, 2025
|
|
biom add-metadata: Error in biom file while adding Taxonomy
|
|
3
|
8
|
April 7, 2025
|
|
alpha and beta diversity
|
|
2
|
20
|
April 6, 2025
|
|
MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
|
|
4
|
275
|
March 25, 2025
|
|
Cutadapt primer removal questions
|
|
4
|
34
|
March 15, 2025
|
|
Calculating diversity metrics and obtaining phyloseq objects from Humann3 outputs
|
|
0
|
27
|
March 6, 2025
|
|
Any Chat LLM Supporting Large FASTQ Files and Full Bioinformatics Pipeline?
|
|
3
|
41
|
April 5, 2025
|
|
Issues with FPKM Calculation in RNA-seq Analysis (Apodemus agrarius)
|
|
1
|
11
|
February 27, 2025
|
|
Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity
|
|
2
|
23
|
March 13, 2025
|
|
Impact of number of bootstraps on RDP classification
|
|
2
|
44
|
March 7, 2025
|
|
Issue with LEfSe Analysis in QIIME2 – IndexError
|
|
1
|
24
|
January 30, 2025
|
|
physeq and even sampling depth
|
|
1
|
416
|
January 28, 2024
|
|
MicrobiotaProcess: invalid zip name argument
|
|
1
|
24
|
January 22, 2025
|
|
Placing filtered ASV sequences into guide tree, per clade
|
|
3
|
38
|
January 10, 2025
|
|
ggplot2: Relative Abundances Whisker Plot for Individual Phyla across samples
|
|
5
|
53
|
December 25, 2024
|
|
qiime2R IRanges installation issue
|
|
6
|
1207
|
December 13, 2024
|
|
Add taxonomy to biom file
|
|
3
|
32
|
January 10, 2025
|
|
Error messages after cutadapt, but got trimmed files.
|
|
5
|
54
|
December 8, 2024
|
|
Converting QIIME 2 Output to VALENCIA Format (ASV Taxon and Read Count Table)
|
|
12
|
106
|
December 5, 2024
|
|
qiime2R unable to access index for repository when downloading
|
|
10
|
192
|
October 30, 2024
|
|
downloading qiita 10317, and analysis for multiple files
|
|
1
|
33
|
October 28, 2024
|
|
ANCOM-BC2 paired samples analysis
|
|
2
|
211
|
September 27, 2024
|
|
Can I use DESEQ2 for differential abundance analysis between two groups of samples without replicates
|
|
1
|
182
|
August 21, 2024
|
|
Lefse assign a taxa present in more number of samples in another group to represent a group in which it occurs in fewer number of samples
|
|
4
|
163
|
August 21, 2024
|
|
Statistical analysis from .qza data or .qzv data
|
|
5
|
43
|
August 20, 2024
|
|
ANCOMBC2 in R Error: Estimation failed for the following covariates:
|
|
2
|
111
|
September 7, 2024
|
|
IndexError: index 0 is out of bounds for axis 0 with size 0
|
|
6
|
1266
|
August 2, 2024
|
