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help with PRONAME --clusterid fatal error
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1
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71
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July 29, 2025
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Error when creating a phyloseq object
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2
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88
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July 21, 2025
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Can I run QIIME2 on Multiplexed 16S ONT files?
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7
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311
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July 8, 2025
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PICRUST2 Input Data setting
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1
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185
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July 8, 2025
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adonis2 output without metadata information
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6
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382
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June 26, 2025
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qza_to_phyloseq error: otu_table slot is empty
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0
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45
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June 9, 2025
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Highly recommend Visidata for viewing Qiime2 files on the CLI
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0
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72
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June 12, 2025
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QIIME2R importing phyloseq objects differently
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1
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101
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June 9, 2025
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Constructed from biom file
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1
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63
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June 6, 2025
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Changing rooted tree tip lavels from IDs to taxonomy
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2
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79
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June 3, 2025
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Using ANCOM-BC instead of aldex2 for differential abundance plots in R
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0
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142
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April 18, 2025
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Error when trying to install qiime2R package
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1
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103
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April 14, 2025
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how to normalize picrust2 predicted results
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0
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160
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April 1, 2025
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biom add-metadata: Error in biom file while adding Taxonomy
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3
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73
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April 7, 2025
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alpha and beta diversity
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2
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105
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April 6, 2025
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MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
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4
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369
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March 25, 2025
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Cutadapt primer removal questions
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4
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295
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March 15, 2025
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Calculating diversity metrics and obtaining phyloseq objects from Humann3 outputs
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0
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100
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March 6, 2025
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Any Chat LLM Supporting Large FASTQ Files and Full Bioinformatics Pipeline?
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2
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149
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March 4, 2025
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Issues with FPKM Calculation in RNA-seq Analysis (Apodemus agrarius)
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1
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51
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February 27, 2025
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Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity
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1
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106
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February 10, 2025
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Impact of number of bootstraps on RDP classification
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1
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108
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February 4, 2025
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Issue with LEfSe Analysis in QIIME2 – IndexError
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1
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97
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January 30, 2025
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physeq and even sampling depth
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1
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691
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January 28, 2024
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MicrobiotaProcess: invalid zip name argument
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1
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106
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January 22, 2025
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Placing filtered ASV sequences into guide tree, per clade
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3
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115
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January 10, 2025
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ggplot2: Relative Abundances Whisker Plot for Individual Phyla across samples
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5
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180
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December 25, 2024
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qiime2R IRanges installation issue
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4
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1277
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December 13, 2024
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Add taxonomy to biom file
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2
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82
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December 10, 2024
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Error messages after cutadapt, but got trimmed files.
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4
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237
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November 7, 2024
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