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QIIME2R importing phyloseq objects differently
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1
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71
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June 9, 2025
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Constructed from biom file
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1
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54
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June 6, 2025
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Changing rooted tree tip lavels from IDs to taxonomy
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2
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57
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June 3, 2025
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Using ANCOM-BC instead of aldex2 for differential abundance plots in R
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1
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112
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May 19, 2025
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Error when trying to install qiime2R package
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2
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70
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May 16, 2025
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how to normalize picrust2 predicted results
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1
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136
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May 2, 2025
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biom add-metadata: Error in biom file while adding Taxonomy
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4
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53
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May 8, 2025
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alpha and beta diversity
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2
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89
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April 6, 2025
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MICOM ERROR:All numerical optimizations failed. This indicates a problem with the solver or numerical instabilities. Check that you have CPLEX or Gurobi installed. You may also increase the abundance cutoff to create simpler models.
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4
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336
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March 25, 2025
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Cutadapt primer removal questions
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4
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199
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March 15, 2025
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Calculating diversity metrics and obtaining phyloseq objects from Humann3 outputs
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0
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81
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March 6, 2025
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Any Chat LLM Supporting Large FASTQ Files and Full Bioinformatics Pipeline?
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3
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103
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April 5, 2025
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Issues with FPKM Calculation in RNA-seq Analysis (Apodemus agrarius)
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1
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30
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February 27, 2025
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Trimming Paired-End Sequences with cutadapt While Maintaining Pairing Integrity
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2
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74
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March 13, 2025
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Impact of number of bootstraps on RDP classification
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2
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89
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March 7, 2025
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Issue with LEfSe Analysis in QIIME2 – IndexError
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1
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83
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January 30, 2025
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physeq and even sampling depth
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1
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624
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January 28, 2024
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MicrobiotaProcess: invalid zip name argument
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1
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48
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January 22, 2025
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Placing filtered ASV sequences into guide tree, per clade
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3
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84
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January 10, 2025
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ggplot2: Relative Abundances Whisker Plot for Individual Phyla across samples
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5
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131
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December 25, 2024
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qiime2R IRanges installation issue
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6
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1252
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December 13, 2024
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Add taxonomy to biom file
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3
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68
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January 10, 2025
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Error messages after cutadapt, but got trimmed files.
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5
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131
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December 8, 2024
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Converting QIIME 2 Output to VALENCIA Format (ASV Taxon and Read Count Table)
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12
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239
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December 5, 2024
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qiime2R unable to access index for repository when downloading
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10
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378
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October 30, 2024
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downloading qiita 10317, and analysis for multiple files
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1
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87
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October 28, 2024
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ANCOM-BC2 paired samples analysis
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2
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528
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September 27, 2024
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Can I use DESEQ2 for differential abundance analysis between two groups of samples without replicates
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1
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344
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August 21, 2024
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Lefse assign a taxa present in more number of samples in another group to represent a group in which it occurs in fewer number of samples
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4
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306
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August 21, 2024
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Statistical analysis from .qza data or .qzv data
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5
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86
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August 20, 2024
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