Topics tagged qiime2r

Topic	Replies	Views	Activity
QIIME2R importing phyloseq objects differently Other Bioinformatics Tools qiime2r	1	98	June 9, 2025
Using ANCOM-BC instead of aldex2 for differential abundance plots in R Other Bioinformatics Tools r , qiime2r , ancom-bc	0	142	April 18, 2025
Error when trying to install qiime2R package Other Bioinformatics Tools r , qiime2-r , qiime2r	1	102	April 14, 2025
MicrobiotaProcess: invalid zip name argument Other Bioinformatics Tools qiime2r	1	104	January 22, 2025
Assistance with Genus-Level Classification and Filtering ASV/OTUs User Support feature-classifier , taxonomy , qiime2r	16	446	January 5, 2025
qiime2R unable to access index for repository when downloading Other Bioinformatics Tools qiime2r	10	447	October 30, 2024
Taxonomy Table Using R Studio Other Bioinformatics Tools taxonomy , qiime2r	1	454	February 15, 2024
I want to get the mean and median abundance or relative abundance for each bacteria species from OTU tables User Support dada2 , otus , numpy , qiime2r	3	502	December 13, 2023
qiime2R error GreenGenes2 tree Other Bioinformatics Tools qiime2r , greengenes2	8	428	October 30, 2023
Regarding Databases User Support feature-classifier , taxonomy , qiime2r , 18s , metagenomics	3	523	August 3, 2023
read_q2metadata showing error Other Bioinformatics Tools qiime2r	2	245	July 27, 2023
Failed in Reads merging User Support dada2 , feature-table , merge , qiime2r	5	515	July 6, 2023
Error to executing the Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R Library Support r , qiime2r	3	389	May 31, 2023
Trying to visualise q2-picrust2 data on R PICRUSt2 r , picrust , qiime2r	1	3216	January 3, 2023
Qiime2R error while creating point and line plot Other Bioinformatics Tools qiime2r	2	790	March 21, 2023
qiime2r installation in R Library Support qiime2r	1	3922	March 14, 2023
Failure to plot Phylogenetic Tree User Support qiime2r	2	489	February 7, 2023
Building heatmap using Qiime2r Other Bioinformatics Tools heatmap , qiime2r	4	601	January 24, 2023
faith_pd_vector error in QIIME2r_V2 column Library Support qiime2r	3	973	January 17, 2023
Data is demultiplexed or not? And DADA2 or Qiime2 as a pipeline? User Support dada2 , import , demux , qiime2r	3	1024	December 17, 2022
Error in parse_taxonomy(taxonomy) Library Support qiime2r	0	300	December 1, 2022
QIIME 1 Script Equivalent in QIIME 2 - summarize_taxa.py, alpha_diversity.py, beta_diversity.py User Support dada2 , taxonomy , diversity , qiime1 , alpha , qiime2r	1	766	November 16, 2022
Heatmap of core microbiome using qiime2R Other Bioinformatics Tools heatmap , qiime2r	1	934	October 5, 2022
facing challenges specifying color and shape commands in https://forum.qiime2.org/t/tutorial-integrating-qiime2-and-r-for-data-visualization-and-analysis-using-qiime2r/4121#plotting-pcoa-12 Other Bioinformatics Tools qiime2r	6	431	September 7, 2022
Qiime2R Heatmap construction challenges Other Bioinformatics Tools heatmap , qiime2r	0	403	August 30, 2022
error installing qiime2R on R 4.2.0 Technical Support qiime2r	1	1640	July 1, 2022
V4 sequence after extact-reads from 16S in not a substring User Support qiime2r	2	317	June 1, 2022
Taxonomy table looked different in R than when it was opened in QIIME (missing taxon level prefix)? Other Bioinformatics Tools r , jupyter , phyloseq , qiime2r	3	669	June 1, 2022
Order of sample in taxa barplots Other Bioinformatics Tools qiime2r	4	607	March 9, 2022
Making alpha diversity Boxplots in R using .qza files from Qiime2 core-metrics-results Other Bioinformatics Tools boxplots , qiime2r	6	4222	November 19, 2021