qiime2r installation in R

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1

Hello,

I am trying to install the qiime2r package in the rstudio from: GitHub - jbisanz/qiime2R: Import qiime2 artifacts to R, it was working and I ran into the error here:

ERROR: dependency ‘ape’ is not available for package ‘qiime2R’

  • removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/qiime2R’
    Warning messages:
    1: In i.p(...) : installation of package ‘ape’ had non-zero exit status
    2: In i.p(...) :
    installation of package ‘/var/folders/tp/grl_74w528x5n5tbfy43200w0000gn/T//Rtmp8yhaZq/file117c28162c01/qiime2R_0.99.6.tar.gz’ had non-zero exit status

Do you have any idea why this happened and how to get it fixed?

Thank you

2

Based on the error it looks like you need to install the dependency 'ape'. If something like this happens I normally just try install.packages("<packagename>") so in this case install.packages("ape").

If that doesn't work I google it, sometimes it'll be an OS package that needs to be installed, or the R package isn't available in the standard repository.

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