Topics tagged qiime2r

Topic	Replies	Views	Activity
Taxonomy Table Using R Studio Other Bioinformatics Tools taxonomy , qiime2r	1	170	February 15, 2024
I want to get the mean and median abundance or relative abundance for each bacteria species from OTU tables User Support dada2 , otus , numpy , qiime2r	8	223	January 14, 2024
qiime2R error GreenGenes2 tree Other Bioinformatics Tools qiime2r , greengenes2	8	252	October 30, 2023
Regarding Databases User Support feature-classifier , taxonomy , qiime2r , 18s , metagenomics	4	336	September 3, 2023
read_q2metadata showing error Other Bioinformatics Tools qiime2r	3	190	August 27, 2023
Failed in Reads merging User Support dada2 , feature-table , merge , qiime2r	6	326	August 6, 2023
Error to executing the Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R Community Plugin Support r , qiime2r	4	282	July 2, 2023
Trying to visualise q2-picrust2 data on R Other Bioinformatics Tools r , picrust , qiime2r	2	2548	March 30, 2023
Qiime2R error while creating point and line plot Other Bioinformatics Tools qiime2r	3	562	April 21, 2023
qiime2r installation in R Community Plugin Support qiime2r	2	1352	April 14, 2023
Failure to plot Phylogenetic Tree User Support qiime2r	3	332	March 10, 2023
Building heatmap using Qiime2r Other Bioinformatics Tools heatmap , qiime2r	4	434	January 24, 2023
faith_pd_vector error in QIIME2r_V2 column Community Plugin Support qiime2r	3	802	January 17, 2023
Data is demultiplexed or not? And DADA2 or Qiime2 as a pipeline? User Support dada2 , import , demux , qiime2r	4	703	January 17, 2023
Error in parse_taxonomy(taxonomy) Community Plugin Support qiime2r	0	209	December 1, 2022
QIIME 1 Script Equivalent in QIIME 2 - summarize_taxa.py, alpha_diversity.py, beta_diversity.py User Support dada2 , taxonomy , diversity , qiime1 , alpha , qiime2r	2	585	December 17, 2022
Heatmap of core microbiome using qiime2R Other Bioinformatics Tools heatmap , qiime2r	1	713	October 5, 2022
facing challenges specifying color and shape commands in https://forum.qiime2.org/t/tutorial-integrating-qiime2-and-r-for-data-visualization-and-analysis-using-qiime2r/4121#plotting-pcoa-12 Other Bioinformatics Tools qiime2r	9	345	October 9, 2022
Qiime2R Heatmap construction challenges Other Bioinformatics Tools heatmap , qiime2r	1	327	October 1, 2022
error installing qiime2R on R 4.2.0 Technical Support qiime2r	2	1202	August 1, 2022
V4 sequence after extact-reads from 16S in not a substring User Support qiime2r	3	260	July 2, 2022
Taxonomy table looked different in R than when it was opened in QIIME (missing taxon level prefix)? Other Bioinformatics Tools r , jupyter , phyloseq , qiime2r	3	524	June 1, 2022
Order of sample in taxa barplots Other Bioinformatics Tools qiime2r	4	454	March 9, 2022
Making alpha diversity Boxplots in R using .qza files from Qiime2 core-metrics-results Other Bioinformatics Tools boxplots , qiime2r	6	2900	November 19, 2021
Qiime2R: Rearranging x-axis in taxa_barplot Community Plugin Support qiime2r	2	528	May 21, 2021
qiime2R heatmap Community Plugin Support qiime2r	2	703	May 10, 2021
"qiime" command not working inside EC2 instance Technical Support aws , qiime2r	2	606	March 20, 2021
why the average value changed in Qiime2R Other Bioinformatics Tools qiime2r	2	504	December 25, 2020
how to make a heatmap with phyloseq? Other Bioinformatics Tools qiime2r	16	4960	December 19, 2020
How to make a heatmap use some groups of all samples in qiime2R? Other Bioinformatics Tools qiime2r	0	909	December 15, 2020