Topics tagged qiime2r

Topic	Replies	Views	Activity
Using ANCOM-BC instead of aldex2 for differential abundance plots in R Other Bioinformatics Tools r , qiime2r , ancom-bc	1	30	May 19, 2025
Error when trying to install qiime2R package Other Bioinformatics Tools r , qiime2-r , qiime2r	2	21	May 16, 2025
MicrobiotaProcess: invalid zip name argument Other Bioinformatics Tools qiime2r	1	29	January 22, 2025
Assistance with Genus-Level Classification and Filtering ASV/OTUs User Support feature-classifier , taxonomy , qiime2r	17	243	February 13, 2025
qiime2R unable to access index for repository when downloading Other Bioinformatics Tools qiime2r	10	221	October 30, 2024
Taxonomy Table Using R Studio Other Bioinformatics Tools taxonomy , qiime2r	1	398	February 15, 2024
I want to get the mean and median abundance or relative abundance for each bacteria species from OTU tables User Support dada2 , otus , numpy , qiime2r	8	406	January 14, 2024
qiime2R error GreenGenes2 tree Other Bioinformatics Tools qiime2r , greengenes2	8	345	October 30, 2023
Regarding Databases User Support feature-classifier , taxonomy , qiime2r , 18s , metagenomics	4	465	September 3, 2023
read_q2metadata showing error Other Bioinformatics Tools qiime2r	3	224	August 27, 2023
Failed in Reads merging User Support dada2 , feature-table , merge , qiime2r	6	457	August 6, 2023
Error to executing the Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R Library Plugin Support r , qiime2r	4	348	July 2, 2023
Trying to visualise q2-picrust2 data on R PICRUSt2 r , picrust , qiime2r	2	3068	March 30, 2023
Qiime2R error while creating point and line plot Other Bioinformatics Tools qiime2r	3	752	April 21, 2023
qiime2r installation in R Library Plugin Support qiime2r	2	3123	April 14, 2023
Failure to plot Phylogenetic Tree User Support qiime2r	3	416	March 10, 2023
Building heatmap using Qiime2r Other Bioinformatics Tools heatmap , qiime2r	4	550	January 24, 2023
faith_pd_vector error in QIIME2r_V2 column Library Plugin Support qiime2r	3	919	January 17, 2023
Data is demultiplexed or not? And DADA2 or Qiime2 as a pipeline? User Support dada2 , import , demux , qiime2r	4	913	January 17, 2023
Error in parse_taxonomy(taxonomy) Library Plugin Support qiime2r	0	286	December 1, 2022
QIIME 1 Script Equivalent in QIIME 2 - summarize_taxa.py, alpha_diversity.py, beta_diversity.py User Support dada2 , taxonomy , diversity , qiime1 , alpha , qiime2r	2	728	December 17, 2022
Heatmap of core microbiome using qiime2R Other Bioinformatics Tools heatmap , qiime2r	1	899	October 5, 2022
facing challenges specifying color and shape commands in https://forum.qiime2.org/t/tutorial-integrating-qiime2-and-r-for-data-visualization-and-analysis-using-qiime2r/4121#plotting-pcoa-12 Other Bioinformatics Tools qiime2r	9	381	October 9, 2022
Qiime2R Heatmap construction challenges Other Bioinformatics Tools heatmap , qiime2r	1	383	October 1, 2022
error installing qiime2R on R 4.2.0 Technical Support qiime2r	2	1583	August 1, 2022
V4 sequence after extact-reads from 16S in not a substring User Support qiime2r	3	292	July 2, 2022
Taxonomy table looked different in R than when it was opened in QIIME (missing taxon level prefix)? Other Bioinformatics Tools r , jupyter , phyloseq , qiime2r	3	632	June 1, 2022
Order of sample in taxa barplots Other Bioinformatics Tools qiime2r	4	576	March 9, 2022
Making alpha diversity Boxplots in R using .qza files from Qiime2 core-metrics-results Other Bioinformatics Tools boxplots , qiime2r	6	3716	November 19, 2021
Qiime2R: Rearranging x-axis in taxa_barplot Library Plugin Support qiime2r	2	619	May 21, 2021