I'm carrying out diversity and relative abundance analysis on a 16S sequenced dataset that I have run through the dada2 pipeline to create the OTU table - DADA2 Pipeline Tutorial (1.16)
and converted it to the hdf5 .biom format - Converting between file formats — biom-format.org
The problem I am running it is that team I am working with are still operating on qiime 1 and have not upgraded, and am having trouble finding tutorials for the specific analysis I am doing. As a work around was able to run qiime 1 on a virtual machine but that is not a good long term strategy.
Can anybody point me in the direction of tutorials to run the equivalent of the summarize_taxa.py, alpha_diversity.py, and beta_diversity.py scripts found here - QIIME Scripts — Homepage in qiime 2?