Alpha diversity with filtered raw data or unfiltered raw data
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1
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11
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April 24, 2025
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taxonomy mitochondria vs D_4__Mitochondria
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2
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17
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April 22, 2025
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Using ANCOM-BC instead of aldex2 for differential abundance plots in R
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0
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22
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April 18, 2025
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Error when trying to install qiime2R package
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1
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16
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April 14, 2025
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ggplot2: Relative Abundances Whisker Plot for Individual Phyla across samples
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5
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53
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December 25, 2024
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Troubles running ANCOM-BC in R on Linux
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4
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48
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December 7, 2024
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How to select differential abundant ASVs/ Keggs from ancombc2 for enrichment analysis
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3
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827
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July 28, 2024
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Unweighted Unifrac looks weird
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2
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145
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June 21, 2024
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Pie chart in R revising to match the segment
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3
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227
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May 17, 2024
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Integrating Q2 and R - Problem to plot PCoA
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4
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198
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March 9, 2024
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Making multiple box plots with relative abundance in R
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0
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348
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November 29, 2023
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Is my command right for classifying ? (I changed my classifier command to use q2-feature-classifier)
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4
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363
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November 22, 2023
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ASV table and Taxonomy table have different formats with greengenes2
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9
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1533
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August 8, 2023
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Error while trying to plot stat_ellipse
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3
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832
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August 26, 2023
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Difficulties in built a correlation network after using q2-SCNIC
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18
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1388
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June 29, 2023
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Error to executing the Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R
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4
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348
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July 2, 2023
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Issue with picrust2 output and ggpicrust in R (object 'p_values_df' not found)
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0
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640
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May 23, 2023
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How can I change the Aldex .clr result in R to the table file which can be downloaded ?
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2
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501
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April 5, 2023
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Trying to visualise q2-picrust2 data on R
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2
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3039
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March 30, 2023
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How can I obtain the significantly different taxa data from this Aldex plot ? (Using R)
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1
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363
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March 16, 2023
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Debudding an error was encountered while running DADA2 in R
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6
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363
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January 21, 2023
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does anyone how to make a MicrobiomeMarker object form phyloseq in Rstudio?
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2
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1166
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October 15, 2022
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Specify other R version outside of qiime's conda
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3
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465
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October 23, 2022
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Beta diversity analysis in R using Qimme 2 generated qza files
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6
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1076
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July 24, 2022
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Taxonomy table looked different in R than when it was opened in QIIME (missing taxon level prefix)?
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3
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631
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June 1, 2022
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Headers removed when importing phyloseq object for decontam
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8
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2753
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September 21, 2021
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sepp in R (phyloseq)
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3
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489
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May 2, 2021
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Combine the taxonomy table with the ASV count table
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4
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3557
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April 15, 2021
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Why has GNEISS been deprecated from Qiime2?
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5
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1091
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March 8, 2021
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Missing `we.eBH` from the aldex2 differential.qza results
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3
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990
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February 5, 2021
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