Topics tagged r

Topic	Replies	Views	Activity
ggplot2: Relative Abundances Whisker Plot for Individual Phyla across samples Other Bioinformatics Tools r	5	48	December 25, 2024
Troubles running ANCOM-BC in R on Linux Technical Support r , conda , ancom-bc	4	48	December 7, 2024
How to select differential abundant ASVs/ Keggs from ancombc2 for enrichment analysis Other Bioinformatics Tools r , ancom-bc	3	821	July 28, 2024
Unweighted Unifrac looks weird User Support r , emperor , diversity , beta , unifrac	2	144	June 21, 2024
Pie chart in R revising to match the segment Other Bioinformatics Tools r , feature-table	3	224	May 17, 2024
Integrating Q2 and R - Problem to plot PCoA Other Bioinformatics Tools r , pcoa	4	197	March 9, 2024
Making multiple box plots with relative abundance in R Other Bioinformatics Tools r , boxplots	0	347	November 29, 2023
Is my command right for classifying ? (I changed my classifier command to use q2-feature-classifier) General Discussion r , feature-classifier , taxonomy , feature-table	4	362	November 22, 2023
ASV table and Taxonomy table have different formats with greengenes2 Other Bioinformatics Tools r , phyloseq , greengenes2	9	1525	August 8, 2023
Error while trying to plot stat_ellipse Other Bioinformatics Tools r	3	827	August 26, 2023
Difficulties in built a correlation network after using q2-SCNIC Other Bioinformatics Tools r , network , cytoscape , scnic	18	1383	June 29, 2023
Error to executing the Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R Library Plugin Support r , qiime2r	4	348	July 2, 2023
Issue with picrust2 output and ggpicrust in R (object 'p_values_df' not found) PICRUSt2 r , picrust	0	639	May 23, 2023
How can I change the Aldex .clr result in R to the table file which can be downloaded ? Other Bioinformatics Tools r , normalization	2	500	April 5, 2023
Trying to visualise q2-picrust2 data on R PICRUSt2 r , picrust , qiime2r	2	3029	March 30, 2023
How can I obtain the significantly different taxa data from this Aldex plot ? (Using R) Other Bioinformatics Tools r , aldex2	1	363	March 16, 2023
Debudding an error was encountered while running DADA2 in R User Support dada2 , r	6	363	January 21, 2023
does anyone how to make a MicrobiomeMarker object form phyloseq in Rstudio? Other Bioinformatics Tools r , phyloseq , table	2	1161	October 15, 2022
Specify other R version outside of qiime's conda Technical Support r	3	464	October 23, 2022
Beta diversity analysis in R using Qimme 2 generated qza files Other Bioinformatics Tools r	6	1068	July 24, 2022
Taxonomy table looked different in R than when it was opened in QIIME (missing taxon level prefix)? Other Bioinformatics Tools r , jupyter , phyloseq , qiime2r	3	629	June 1, 2022
Headers removed when importing phyloseq object for decontam Other Bioinformatics Tools r , decontam	8	2753	September 21, 2021
sepp in R (phyloseq) User Support r , phylogeny , sepp , phyloseq	3	489	May 2, 2021
Combine the taxonomy table with the ASV count table Other Bioinformatics Tools dada2 , r , taxonomy	4	3540	April 15, 2021
Why has GNEISS been deprecated from Qiime2? User Support r , gneiss	5	1088	March 8, 2021
Missing `we.eBH` from the aldex2 differential.qza results Library Plugin Support r , aldex2	3	987	February 5, 2021
Error: Must request at least one colour from a hue palette Other Bioinformatics Tools r , q2-songbird	2	3262	March 8, 2021
Something wrong with biom and metadata files from qiita analysis Other Bioinformatics Tools r	6	1484	November 3, 2020
Loosing reads after merging and chimera removal step Other Bioinformatics Tools dada2 , r	5	1239	April 12, 2020
Reverting to Qiime2 after using DADA2 in R User Support dada2 , r , export , feature-table	5	2017	February 8, 2020