Topics tagged sepp

Topic	Replies	Views	Activity
Problem with qza file for fragment-insertion sepp: Invalid value for '--i-representative-sequences' Technical Support sepp , fragment-insertion	8	59	August 5, 2024
Best practices for generating a custom SeppReferenceDatabase qza? Technical Support import , sepp	3	263	April 21, 2024
SEPP reference databases for Greengenes2 User Support sepp , greengenes2	4	473	February 17, 2024
SEPP acess files User Support sepp	4	230	November 28, 2022
greengene version in SEPP plugin User Support sepp , fragment-insertion	5	500	May 15, 2022
error from fragment-insertion sepp Technical Support sepp	19	875	April 11, 2022
qiime fragment-insertion sepp running for more than 20 hours Technical Support sepp	2	325	December 16, 2021
Having trouble with alignment: mafft, SEPP, & SINA Technical Support import , align , mafft , sepp	10	1624	November 11, 2021
sepp in R (phyloseq) User Support r , phylogeny , sepp , phyloseq	3	493	May 2, 2021
RESCRIPt, SEPP and database correlation Library Plugin Support silva , sepp , rescript	8	1727	February 3, 2021
Error from Fragment-Insertion Sepp - non-zero exit status 1 Technical Support dada2 , sepp , fragment-insertion	4	790	November 20, 2020
Trouble generating SeppReferenceDatabase qza Technical Support import , sepp	13	2049	November 15, 2020
Measuring representation in a fragment insertion tree General Discussion sepp	1	442	October 9, 2020
Non-zero exit status when performing fragment-insertion sepp Technical Support sepp , fragment-insertion	18	1606	July 8, 2020
Error when using sepp with vsearch clustered rep-seqs Technical Support sepp	7	1120	January 6, 2020
Problem with Fragment Insertion - SEPP Technical Support sepp	16	2486	September 7, 2019
Fix required: Tips in a tree detected as repeated User Support core-metrics , otus , closed-reference , tree , sepp	7	738	October 1, 2024
Weird taxonomic names User Support taxonomy , sepp , python-api	6	1477	March 15, 2019
Plugin error from fragment-insertion - CalledProcessError - run-sepp.sh - non-zero exit status 1 Technical Support picrust , sepp , fragment-insertion	25	2745	January 19, 2019
Run-sepp.sh error again User Support sepp , fragment-insertion	4	1810	October 4, 2018
Run-sepp.sh returned non-zero exit status 1 User Support sepp , fragment-insertion	7	2657	June 18, 2018
Error with imported sepp tree in qiime2 diversity analyses User Support phylogeny , core-metrics , tree , sepp , fragment-insertion	7	1852	December 31, 2017