I need some help accessing files.qza.
I run the command fragment-insertion SEPP and I get a plugin error. So, I used the indication in the forum and tried:
qiime fragment-insertion sepp --i-representative-sequences rep-seqs-dada2.qza --o-tree i-tree.qza --o-placements insertion-placements.qza --p-debug --verbose 2> err.txt > out.txt
How can I access the outputs.qza in the files out.txt to use?
Thank you.
If you are getting an error that will be found in your err.txt in the directory where you are running the command, I do not believe that out.txt is catching anything.
However if you want the .qza from that command and you are not getting an error(if there is an error, the command will probably stop running), you should be getting the "i-tree.qza " and the "insertion-placements.qza" in the directory that you are in. Run "ls" in your current directory and if you don't see the files you expecting, send a screenshot in your next reply!
Hope that helps!
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