Topics tagged tree

Topic	Replies	Views	Activity
Phylogenetic tree: Reconstruct vs. Prune - When to? General Discussion tree	6	106	November 15, 2025
Placing filtered ASV sequences into guide tree, per clade Other Bioinformatics Tools taxonomy , tree , asv	3	78	January 10, 2025
Error occured while running for MAFFT in qiime2 Technical Support phylogeny , tree	12	240	March 24, 2024
ASVs of the same genus in different branches on the phylogenetic tree User Support taxonomy , phylogeny , tree	3	234	March 21, 2024
What type of database to use for q2-fragment-insertion User Support tree	13	869	October 9, 2023
Export phyloseq tree to qiime2 User Support tree , phyloseq	3	540	August 9, 2023
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	4	395	April 30, 2023
Beta Diversity Profiling & Significance Testing User Support taxonomy , feature-table , pcoa , tree	12	993	December 2, 2022
Remove reference tree from fragment insertion tree User Support tree , fragment-insertion	6	671	July 28, 2022
Importing table and tree with spaces in IDs leads to mismatch Technical Support tree , table	5	489	September 25, 2021
Need some help with phylogenetic diversity and other metrics Other Bioinformatics Tools dada2 , core-metrics , tree	2	739	May 20, 2021
How to make a phylogenetic tree looking too complex more readable? User Support tree	10	2514	January 5, 2020
iqtree error for unrooted tree in phylogeny Technical Support tree	1	792	November 11, 2019
QIIME2R -> trouble with phyloseq and rooted tree Other Bioinformatics Tools dada2 , tree	10	3516	October 28, 2019
When to make the phylogenetic tree General Discussion filtering , tree	1	738	August 6, 2019
Fix required: Tips in a tree detected as repeated User Support core-metrics , otus , closed-reference , tree , sepp	7	758	October 1, 2024
Alignment/Tree Building and Filtering samples User Support filtering , tree	3	829	April 14, 2019
Filter representative FASTA sequences General Discussion phylogeny , tree	3	715	February 13, 2019
Software to visualize the tooted-tree. qza file User Support tree	2	1180	September 15, 2018
What to do about a single non-corresponding tree tip? User Support taxonomy , feature-table , diversity , tree	6	772	September 3, 2018
Collapsing phylogenetic tree User Support tree	4	1589	June 23, 2018
Error phylogen (fasttree) User Support taxonomy , phylogeny , tree	2	1287	June 22, 2018
After qiime phylogeny filter-table does one need qiime phylogeny "filter-sequence"? User Support filtering , tree	5	686	April 21, 2018
Loading Greengenes tree in iTOL User Support greengenes , tree , itol	11	6816	March 17, 2018
File conversion User Support phylogeny , tree , itol	3	2345	March 5, 2018
From qiime2 to R : how to transform a .qza to .tre User Support export , tree	3	5615	February 23, 2018
Phylogenetic table with lablels User Support taxonomy , tree	2	1727	February 23, 2018
How to build a tree with tips collapsed based on the taxonomic classification User Support taxonomy , tree	3	3503	February 18, 2018
Tree visualization User Support tree	23	15193	January 25, 2018
How do I create a tree from a subset of samples? User Support tree	8	3858	December 22, 2017