Hi,
I would like to export my rooted-tree.qza in R and work with phyloseq. For this I would need .tre format for the three.
How can you export your .qza in .tre?
Thank you very much,
Leila
Hi,
I would like to export my rooted-tree.qza in R and work with phyloseq. For this I would need .tre format for the three.
How can you export your .qza in .tre?
Thank you very much,
Leila
Hi @leila,
You can use the export command to get your tree file. The file will be in newick format (.nwk) though and not .tree, but I do believe this should still be fine with phyloseq.
Thanks @Mehrbod_Estaki!
I've seen the file extensions .nwk
, .tre
, and .tree
all used interchangeably with Newick files (I don't think there's much of a standard there). QIIME 2 generally doesn't care about file extensions, though I'm unsure about phyloseq. @leila, if phyloseq isn't able to import the file with .nwk
extension, you could try renaming the file to use .tre
extension.
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