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16S full length nanopore to ASVs (new approach?)
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6
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466
|
April 18, 2024
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can I use qiime 2 to get ASVs?
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2
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162
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January 4, 2024
|
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Converting ASVs from DADA2 to OTUs
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12
|
645
|
November 10, 2023
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Calcualte Unweighted Unifrac and Weighted Unifrac from ASV counts alone?
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2
|
193
|
October 23, 2023
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OTU vs ASV Analysis
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4
|
665
|
October 13, 2023
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ASV or OTU ? What do I have?
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4
|
363
|
October 2, 2023
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How to start analysis with ASV data?
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10
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1266
|
September 3, 2023
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Criteria to discard ASVs
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7
|
750
|
July 25, 2023
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How primer sequences in raw files influence chimera detection in ASV estimation?
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5
|
403
|
July 2, 2023
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Do we need rep-seqs when simulating data?
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4
|
305
|
January 13, 2023
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PICRUST2 removing all ASV sequence
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6
|
867
|
March 21, 2023
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Is it best to work on abundance tables of ASVs or taxa?
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5
|
1353
|
May 23, 2022
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How to create a list of all observed features (ASVs) to compare it with core-features
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7
|
1307
|
September 2, 2021
|
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ASV naming: reviewer reply
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4
|
1005
|
June 4, 2021
|
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I run DADA2 and got significantly different ASV numbers at different machines with the same data and setting.
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5
|
860
|
June 20, 2021
|
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How do I perform diversity analysis (e.g. alpha diversity) on ASV number from different runs
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2
|
746
|
May 7, 2021
|
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Passing ASVs into vsearch for Ghost Tree Analysis
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4
|
748
|
March 15, 2021
|
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Creating & Exporting ASV tables
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|
5
|
3519
|
December 19, 2020
|
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OTU picking with DADA2 input
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|
3
|
1217
|
September 25, 2020
|
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How to define the rare and abundant taxa from the ASV feature table?
|
|
2
|
1152
|
August 22, 2020
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Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
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6
|
2966
|
June 1, 2020
|
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Trimming ASVs in table without reprocessing
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3
|
491
|
April 26, 2020
|
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Is it a reasonable to delete all unclassified and uncultured ASVs in species level ?
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4
|
1487
|
January 21, 2020
|
|
ASV IDs in publication
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6
|
1107
|
December 13, 2019
|
|
ASVs versus OTUs, is conversion possible
|
|
1
|
1858
|
August 23, 2019
|
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ASV naming convention and replicability
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|
3
|
873
|
August 14, 2019
|
|
OTU clustering using ASV table
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|
4
|
1591
|
June 17, 2019
|
|
Tracking which ASV is from which sample
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|
2
|
970
|
April 4, 2019
|
|
What is the definition of sequence variants?
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|
0
|
1415
|
December 28, 2018
|
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Filtering for private ASVs
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|
10
|
3750
|
December 23, 2018
|
