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train a sequence classifier on your own data
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3
|
39
|
July 28, 2025
|
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Placing filtered ASV sequences into guide tree, per clade
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3
|
55
|
January 10, 2025
|
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Composition-aware correlation of ASVs from 2 different amplicons
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3
|
43
|
December 20, 2024
|
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Generate ASV table for nanopore data
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5
|
129
|
December 28, 2024
|
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16S full length nanopore to ASVs (new approach?)
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6
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1145
|
April 18, 2024
|
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can I use qiime 2 to get ASVs?
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2
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164
|
January 4, 2024
|
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Converting ASVs from DADA2 to OTUs
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12
|
772
|
November 10, 2023
|
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Calcualte Unweighted Unifrac and Weighted Unifrac from ASV counts alone?
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2
|
204
|
October 23, 2023
|
|
OTU vs ASV Analysis
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4
|
798
|
October 13, 2023
|
|
ASV or OTU ? What do I have?
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4
|
458
|
October 2, 2023
|
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How to start analysis with ASV data?
|
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10
|
1561
|
September 3, 2023
|
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Criteria to discard ASVs
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7
|
995
|
July 25, 2023
|
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How primer sequences in raw files influence chimera detection in ASV estimation?
|
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5
|
453
|
July 2, 2023
|
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Do we need rep-seqs when simulating data?
|
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4
|
309
|
January 13, 2023
|
|
PICRUST2 removing all ASV sequence
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6
|
907
|
March 21, 2023
|
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Is it best to work on abundance tables of ASVs or taxa?
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5
|
1467
|
May 23, 2022
|
|
How to create a list of all observed features (ASVs) to compare it with core-features
|
|
7
|
1402
|
September 2, 2021
|
|
ASV naming: reviewer reply
|
|
4
|
1031
|
June 4, 2021
|
|
I run DADA2 and got significantly different ASV numbers at different machines with the same data and setting.
|
|
5
|
890
|
June 20, 2021
|
|
How do I perform diversity analysis (e.g. alpha diversity) on ASV number from different runs
|
|
2
|
783
|
May 7, 2021
|
|
Passing ASVs into vsearch for Ghost Tree Analysis
|
|
4
|
762
|
March 15, 2021
|
|
Creating & Exporting ASV tables
|
|
5
|
3789
|
December 19, 2020
|
|
OTU picking with DADA2 input
|
|
3
|
1281
|
September 25, 2020
|
|
How to define the rare and abundant taxa from the ASV feature table?
|
|
2
|
1184
|
August 22, 2020
|
|
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
|
|
6
|
3207
|
June 1, 2020
|
|
Trimming ASVs in table without reprocessing
|
|
3
|
492
|
April 26, 2020
|
|
Is it a reasonable to delete all unclassified and uncultured ASVs in species level ?
|
|
4
|
1567
|
January 21, 2020
|
|
ASV IDs in publication
|
|
6
|
1141
|
December 13, 2019
|
|
ASVs versus OTUs, is conversion possible
|
|
1
|
1904
|
August 23, 2019
|
|
ASV naming convention and replicability
|
|
3
|
902
|
August 14, 2019
|
