|
Is it best to work on abundance tables of ASVs or taxa?
|
|
5
|
94
|
May 23, 2022
|
|
How to create a list of all observed features (ASVs) to compare it with core-features
|
|
7
|
188
|
September 2, 2021
|
|
ASV naming: reviewer reply
|
|
4
|
317
|
June 4, 2021
|
|
I run DADA2 and got significantly different ASV numbers at different machines with the same data and setting.
|
|
5
|
263
|
June 20, 2021
|
|
How do I perform diversity analysis (e.g. alpha diversity) on ASV number from different runs
|
|
2
|
199
|
May 7, 2021
|
|
Passing ASVs into vsearch for Ghost Tree Analysis
|
|
4
|
169
|
March 15, 2021
|
|
Creating & Exporting ASV tables
|
|
5
|
1197
|
December 19, 2020
|
|
OTU picking with DADA2 input
|
|
3
|
295
|
September 25, 2020
|
|
How to define the rare and abundant taxa from the ASV feature table?
|
|
2
|
550
|
August 22, 2020
|
|
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
|
|
6
|
1525
|
June 1, 2020
|
|
Trimming ASVs in table without reprocessing
|
|
3
|
207
|
April 26, 2020
|
|
Is it a reasonable to delete all unclassified and uncultured ASVs in species level ?
|
|
4
|
632
|
January 21, 2020
|
|
ASV IDs in publication
|
|
6
|
500
|
December 13, 2019
|
|
ASVs versus OTUs, is conversion possible
|
|
1
|
1295
|
August 23, 2019
|
|
ASV naming convention and replicability
|
|
3
|
406
|
August 14, 2019
|
|
OTU clustering using ASV table
|
|
4
|
946
|
June 17, 2019
|
|
Tracking which ASV is from which sample
|
|
2
|
525
|
April 4, 2019
|
|
What is the definition of sequence variants?
|
|
0
|
1167
|
December 28, 2018
|
|
Filtering for private ASVs
|
|
10
|
2279
|
December 23, 2018
|
|
How are ASV IDs generated?
|
|
7
|
2015
|
October 23, 2018
|
|
Denoising vs OTU picking methods
|
|
8
|
1670
|
September 3, 2018
|
|
Vocabulary clarification - feature vs ASV
|
|
4
|
3602
|
May 4, 2018
|
|
QIIME 2 processing comparatively to QIIME 1
|
|
2
|
951
|
March 15, 2018
|
