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Placing filtered ASV sequences into guide tree, per clade
|
|
3
|
24
|
January 10, 2025
|
|
Composition-aware correlation of ASVs from 2 different amplicons
|
|
3
|
22
|
December 20, 2024
|
|
Generate ASV table for nanopore data
|
|
5
|
74
|
December 28, 2024
|
|
16S full length nanopore to ASVs (new approach?)
|
|
6
|
741
|
April 18, 2024
|
|
can I use qiime 2 to get ASVs?
|
|
2
|
164
|
January 4, 2024
|
|
Converting ASVs from DADA2 to OTUs
|
|
12
|
704
|
November 10, 2023
|
|
Calcualte Unweighted Unifrac and Weighted Unifrac from ASV counts alone?
|
|
2
|
198
|
October 23, 2023
|
|
OTU vs ASV Analysis
|
|
4
|
703
|
October 13, 2023
|
|
ASV or OTU ? What do I have?
|
|
4
|
387
|
October 2, 2023
|
|
How to start analysis with ASV data?
|
|
10
|
1392
|
September 3, 2023
|
|
Criteria to discard ASVs
|
|
7
|
813
|
July 25, 2023
|
|
How primer sequences in raw files influence chimera detection in ASV estimation?
|
|
5
|
414
|
July 2, 2023
|
|
Do we need rep-seqs when simulating data?
|
|
4
|
305
|
January 13, 2023
|
|
PICRUST2 removing all ASV sequence
|
|
6
|
879
|
March 21, 2023
|
|
Is it best to work on abundance tables of ASVs or taxa?
|
|
5
|
1391
|
May 23, 2022
|
|
How to create a list of all observed features (ASVs) to compare it with core-features
|
|
7
|
1341
|
September 2, 2021
|
|
ASV naming: reviewer reply
|
|
4
|
1020
|
June 4, 2021
|
|
I run DADA2 and got significantly different ASV numbers at different machines with the same data and setting.
|
|
5
|
870
|
June 20, 2021
|
|
How do I perform diversity analysis (e.g. alpha diversity) on ASV number from different runs
|
|
2
|
762
|
May 7, 2021
|
|
Passing ASVs into vsearch for Ghost Tree Analysis
|
|
4
|
753
|
March 15, 2021
|
|
Creating & Exporting ASV tables
|
|
5
|
3630
|
December 19, 2020
|
|
OTU picking with DADA2 input
|
|
3
|
1250
|
September 25, 2020
|
|
How to define the rare and abundant taxa from the ASV feature table?
|
|
2
|
1163
|
August 22, 2020
|
|
Pielou’s evenness, Faith's PD and Shannon’s diversity indices for ASVs instead of "species"
|
|
6
|
3049
|
June 1, 2020
|
|
Trimming ASVs in table without reprocessing
|
|
3
|
491
|
April 26, 2020
|
|
Is it a reasonable to delete all unclassified and uncultured ASVs in species level ?
|
|
4
|
1519
|
January 21, 2020
|
|
ASV IDs in publication
|
|
6
|
1123
|
December 13, 2019
|
|
ASVs versus OTUs, is conversion possible
|
|
1
|
1876
|
August 23, 2019
|
|
ASV naming convention and replicability
|
|
3
|
890
|
August 14, 2019
|
|
OTU clustering using ASV table
|
|
4
|
1605
|
June 17, 2019
|
