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vsearch unrecognized option '--qseqout'
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4
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9
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August 1, 2025
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DeprecationWarning using uchime-stats.qza
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2
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19
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February 22, 2025
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denoising and quality filterin
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3
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34
|
November 27, 2024
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Make OTU cluster from SILVAdatabase
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3
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58
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November 2, 2024
|
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concerns vsearch clustering speed
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5
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81
|
September 5, 2024
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fungal ITS analysis with QIIME2: current recommended workflow?
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7
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1319
|
August 22, 2024
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Duplicates causing issues, how to handle merging and clustering?
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2
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84
|
July 10, 2024
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How to import fasta files which have undergone vsearch based QC
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2
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71
|
July 5, 2024
|
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Vsearch dereplication plugin error
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6
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170
|
May 18, 2024
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qiime vsearch merge-pairs Missing option and Command not found
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7
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418
|
April 30, 2024
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Low percentage of matching unique query sequences in the process of greengenes2 non-v4-16s action
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4
|
174
|
March 29, 2024
|
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qiime vsearch cluster-features-open-reference issue
|
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20
|
433
|
March 18, 2024
|
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Preparing mixed orientation reads for dada2
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6
|
721
|
February 27, 2024
|
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Clustering ASVs into OTUs
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5
|
239
|
February 5, 2024
|
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Frequency per feature is 1 - each read is being considered as unique feature
|
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10
|
347
|
December 9, 2023
|
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Looking for advice on poor merging results with vsearch
|
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10
|
466
|
November 19, 2023
|
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Galaxy - couldn't find vsearch join pairs
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4
|
212
|
September 6, 2023
|
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which ASVs are within an OTU?
|
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2
|
203
|
September 1, 2023
|
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Taxonomy consensus column
|
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4
|
642
|
May 21, 2023
|
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vsearch dereplicate problem
|
|
5
|
396
|
May 18, 2023
|
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Merge feature tables before or after OTU generation from qiime dada2 output?
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2
|
271
|
March 30, 2023
|
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How to resolve missing OTUs in Qiime2 analysis despite finding through BLAST?
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5
|
546
|
April 28, 2023
|
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Good classification, poor clustering
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3
|
260
|
April 14, 2023
|
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How cluster ASV with different length in OTU ?
|
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8
|
924
|
March 9, 2023
|
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vsearch cluster-features-de-novo is taking too long
|
|
6
|
662
|
January 14, 2023
|
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Didn't use vsearch but its citation is showing up in my provenance
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4
|
412
|
November 18, 2022
|
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vsearch classification error
|
|
19
|
706
|
September 23, 2022
|
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Guidance modifying q2-vsearch to recover UC file
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5
|
754
|
August 17, 2022
|
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after vsearch join pairs ,,I lost many reads
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2
|
222
|
September 5, 2022
|
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Vsearch doesn't use more CPUs, why？And other similar codes have same problem.
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2
|
421
|
June 25, 2022
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