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Make OTU cluster from SILVAdatabase
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3
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36
|
November 2, 2024
|
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concerns vsearch clustering speed
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5
|
27
|
September 5, 2024
|
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fungal ITS analysis with QIIME2: current recommended workflow?
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7
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405
|
August 22, 2024
|
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Duplicates causing issues, how to handle merging and clustering?
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2
|
44
|
July 10, 2024
|
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How to import fasta files which have undergone vsearch based QC
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2
|
64
|
July 5, 2024
|
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Vsearch dereplication plugin error
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6
|
150
|
May 18, 2024
|
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qiime vsearch merge-pairs Missing option and Command not found
|
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7
|
327
|
April 30, 2024
|
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Low percentage of matching unique query sequences in the process of greengenes2 non-v4-16s action
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4
|
159
|
March 29, 2024
|
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qiime vsearch cluster-features-open-reference issue
|
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20
|
381
|
March 18, 2024
|
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Preparing mixed orientation reads for dada2
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6
|
563
|
February 27, 2024
|
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Clustering ASVs into OTUs
|
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5
|
216
|
February 5, 2024
|
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Frequency per feature is 1 - each read is being considered as unique feature
|
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10
|
316
|
December 9, 2023
|
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Looking for advice on poor merging results with vsearch
|
|
10
|
394
|
November 19, 2023
|
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Galaxy - couldn't find vsearch join pairs
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4
|
210
|
September 6, 2023
|
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which ASVs are within an OTU?
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2
|
199
|
September 1, 2023
|
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Taxonomy consensus column
|
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4
|
613
|
May 21, 2023
|
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vsearch dereplicate problem
|
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5
|
390
|
May 18, 2023
|
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Merge feature tables before or after OTU generation from qiime dada2 output?
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2
|
262
|
March 30, 2023
|
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How to resolve missing OTUs in Qiime2 analysis despite finding through BLAST?
|
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5
|
525
|
April 28, 2023
|
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Good classification, poor clustering
|
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3
|
255
|
April 14, 2023
|
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How cluster ASV with different length in OTU ?
|
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8
|
843
|
March 9, 2023
|
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vsearch cluster-features-de-novo is taking too long
|
|
6
|
615
|
January 14, 2023
|
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Didn't use vsearch but its citation is showing up in my provenance
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4
|
407
|
November 18, 2022
|
|
vsearch classification error
|
|
19
|
699
|
September 23, 2022
|
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Guidance modifying q2-vsearch to recover UC file
|
|
5
|
752
|
August 17, 2022
|
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after vsearch join pairs ,,I lost many reads
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|
2
|
219
|
September 5, 2022
|
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Vsearch doesn't use more CPUs, why？And other similar codes have same problem.
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2
|
404
|
June 25, 2022
|
|
vsearch join pairs
|
|
2
|
1130
|
May 15, 2022
|
|
how can i get a reference-seqs in closeed-reference clusttering
|
|
4
|
484
|
April 30, 2022
|
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q2-vsearch and vsearch
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|
2
|
1314
|
March 21, 2022
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