|
DeprecationWarning using uchime-stats.qza
|
|
1
|
17
|
January 22, 2025
|
|
denoising and quality filterin
|
|
3
|
20
|
November 27, 2024
|
|
Make OTU cluster from SILVAdatabase
|
|
3
|
44
|
November 2, 2024
|
|
concerns vsearch clustering speed
|
|
5
|
47
|
September 5, 2024
|
|
fungal ITS analysis with QIIME2: current recommended workflow?
|
|
7
|
735
|
August 22, 2024
|
|
Duplicates causing issues, how to handle merging and clustering?
|
|
2
|
56
|
July 10, 2024
|
|
How to import fasta files which have undergone vsearch based QC
|
|
2
|
66
|
July 5, 2024
|
|
Vsearch dereplication plugin error
|
|
6
|
160
|
May 18, 2024
|
|
qiime vsearch merge-pairs Missing option and Command not found
|
|
7
|
361
|
April 30, 2024
|
|
Low percentage of matching unique query sequences in the process of greengenes2 non-v4-16s action
|
|
4
|
164
|
March 29, 2024
|
|
qiime vsearch cluster-features-open-reference issue
|
|
20
|
399
|
March 18, 2024
|
|
Preparing mixed orientation reads for dada2
|
|
6
|
653
|
February 27, 2024
|
|
Clustering ASVs into OTUs
|
|
5
|
230
|
February 5, 2024
|
|
Frequency per feature is 1 - each read is being considered as unique feature
|
|
10
|
327
|
December 9, 2023
|
|
Looking for advice on poor merging results with vsearch
|
|
10
|
426
|
November 19, 2023
|
|
Galaxy - couldn't find vsearch join pairs
|
|
4
|
212
|
September 6, 2023
|
|
which ASVs are within an OTU?
|
|
2
|
199
|
September 1, 2023
|
|
Taxonomy consensus column
|
|
4
|
627
|
May 21, 2023
|
|
vsearch dereplicate problem
|
|
5
|
393
|
May 18, 2023
|
|
Merge feature tables before or after OTU generation from qiime dada2 output?
|
|
2
|
267
|
March 30, 2023
|
|
How to resolve missing OTUs in Qiime2 analysis despite finding through BLAST?
|
|
5
|
528
|
April 28, 2023
|
|
Good classification, poor clustering
|
|
3
|
256
|
April 14, 2023
|
|
How cluster ASV with different length in OTU ?
|
|
8
|
887
|
March 9, 2023
|
|
vsearch cluster-features-de-novo is taking too long
|
|
6
|
635
|
January 14, 2023
|
|
Didn't use vsearch but its citation is showing up in my provenance
|
|
4
|
409
|
November 18, 2022
|
|
vsearch classification error
|
|
19
|
702
|
September 23, 2022
|
|
Guidance modifying q2-vsearch to recover UC file
|
|
5
|
753
|
August 17, 2022
|
|
after vsearch join pairs ,,I lost many reads
|
|
2
|
220
|
September 5, 2022
|
|
Vsearch doesn't use more CPUs, why？And other similar codes have same problem.
|
|
2
|
409
|
June 25, 2022
|
|
vsearch join pairs
|
|
2
|
1147
|
May 15, 2022
|
