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Quality Scores too high for Qiime2
|
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3
|
32
|
October 25, 2025
|
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vsearch unrecognized option '--qseqout'
|
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4
|
12
|
August 1, 2025
|
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DeprecationWarning using uchime-stats.qza
|
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2
|
22
|
February 22, 2025
|
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denoising and quality filterin
|
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3
|
36
|
November 27, 2024
|
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Make OTU cluster from SILVAdatabase
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3
|
62
|
November 2, 2024
|
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concerns vsearch clustering speed
|
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5
|
95
|
September 5, 2024
|
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fungal ITS analysis with QIIME2: current recommended workflow?
|
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7
|
1569
|
August 22, 2024
|
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Duplicates causing issues, how to handle merging and clustering?
|
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2
|
87
|
July 10, 2024
|
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How to import fasta files which have undergone vsearch based QC
|
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2
|
78
|
July 5, 2024
|
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Vsearch dereplication plugin error
|
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6
|
173
|
May 18, 2024
|
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qiime vsearch merge-pairs Missing option and Command not found
|
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7
|
443
|
April 30, 2024
|
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Low percentage of matching unique query sequences in the process of greengenes2 non-v4-16s action
|
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4
|
180
|
March 29, 2024
|
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qiime vsearch cluster-features-open-reference issue
|
|
20
|
446
|
March 18, 2024
|
|
Preparing mixed orientation reads for dada2
|
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6
|
758
|
February 27, 2024
|
|
Clustering ASVs into OTUs
|
|
5
|
243
|
February 5, 2024
|
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Frequency per feature is 1 - each read is being considered as unique feature
|
|
10
|
347
|
December 9, 2023
|
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Looking for advice on poor merging results with vsearch
|
|
10
|
483
|
November 19, 2023
|
|
Galaxy - couldn't find vsearch join pairs
|
|
4
|
214
|
September 6, 2023
|
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which ASVs are within an OTU?
|
|
2
|
209
|
September 1, 2023
|
|
Taxonomy consensus column
|
|
4
|
647
|
May 21, 2023
|
|
vsearch dereplicate problem
|
|
5
|
399
|
May 18, 2023
|
|
Merge feature tables before or after OTU generation from qiime dada2 output?
|
|
2
|
271
|
March 30, 2023
|
|
How to resolve missing OTUs in Qiime2 analysis despite finding through BLAST?
|
|
5
|
552
|
April 28, 2023
|
|
Good classification, poor clustering
|
|
3
|
261
|
April 14, 2023
|
|
How cluster ASV with different length in OTU ?
|
|
8
|
938
|
March 9, 2023
|
|
vsearch cluster-features-de-novo is taking too long
|
|
6
|
673
|
January 14, 2023
|
|
Didn't use vsearch but its citation is showing up in my provenance
|
|
4
|
413
|
November 18, 2022
|
|
vsearch classification error
|
|
19
|
713
|
September 23, 2022
|
|
Guidance modifying q2-vsearch to recover UC file
|
|
5
|
761
|
August 17, 2022
|
|
after vsearch join pairs ,,I lost many reads
|
|
2
|
227
|
September 5, 2022
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