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Shotgun sequencing of Fungi - UNITE or KRAKEN2
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1
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54
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June 11, 2025
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pre-trained UNITE ITS classifiers for QIIME 2024.10 (and older!)
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12
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7767
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May 9, 2025
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Request for Pre-trained UNITE Classifier (ITS1)
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4
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125
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June 1, 2025
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ITS, 18S, 23S and 28S new reference databases to use in QIIME2
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0
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127
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April 17, 2025
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Q2-ITSxpress: A tutorial on a QIIME 2 plugin to trim ITS sequences
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39
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22832
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January 10, 2025
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How to train a UNITE classifier using RESCRIPt
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11
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1909
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January 3, 2025
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choice of fungal primers
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15
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6417
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December 9, 2024
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fungal ITS analysis with QIIME2: current recommended workflow?
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7
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1604
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August 22, 2024
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ASV vs OTU for fungal ITS
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8
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1146
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July 9, 2024
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Taxa collapse shows too general taxonomic assignations
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12
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277
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July 21, 2024
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Issues with taxonomic classification UNITE 9.0 and 10.0
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3
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358
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July 7, 2024
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Which version of UNITE database should I choose?
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2
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1708
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February 23, 2024
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Training an ITS classifier
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16
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1111
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March 17, 2024
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Merging ITS1 & ITS2 primers: a question about methods
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2
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271
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February 4, 2024
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large ITS dataset
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2
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217
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January 28, 2024
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Using RESCRIPt's 'extract-seq-segments' to extract reference sequences without PCR primer pairs.
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7
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6152
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November 14, 2023
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ITS itsxpress trim-unmerged encounters problems
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2
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261
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October 14, 2023
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q2-hitac: a plugin for taxonomic classification of fungal ITS sequences
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0
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367
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December 15, 2022
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ITS extraction after joining paired-end reads?
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2
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520
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October 13, 2022
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itsxpress - not fastq.gz format error
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21
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912
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October 6, 2022
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Optimizing taxonomy assignment to reduce unassigned ITS reads
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4
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1386
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March 26, 2022
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Interpreting Unassigned/k_Fungi ITS taxonomy generated using 3 reference datasets (UNITE & NCBI)
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2
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750
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March 20, 2022
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Large amount of 'Unassigned' ITS sequences in classify-consensus-blast results
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8
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1665
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November 22, 2021
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Data loss when trimming ITS
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6
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528
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October 25, 2021
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Fungi ITS taxonomy bar plot and relative frequency biom does not match in ratio
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7
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674
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October 23, 2021
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Taxonomic assignment at the species level
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2
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1280
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August 13, 2021
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ITS 1 and 2 Analysis
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3
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874
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July 25, 2021
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several issues with ghost-tree (running and building)
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8
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850
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June 2, 2021
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ITS2 primers trimming without the primers sequences
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3
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1288
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January 19, 2021
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Difference between Unite dynamic and not dynamic classifier
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2
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1159
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October 13, 2020
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