Topics tagged trim

Topic	Replies	Views	Activity
I fell into the swamp of 273bp after trimming adapters and primers through cutadapt... User Support dada2 , cutadapt , trim	8	106	April 18, 2024
How to trim ransposase Adapters using qiime cutadapt or dada2 ? User Support dada2 , primers , trim	6	144	March 1, 2024
ITS itsxpress trim-unmerged encounters problems Technical Support dada2 , its , trim , q2-itsxpress	2	195	October 14, 2023
Deciding trim length for deblur User Support deblur , trim	3	208	September 1, 2023
Demultiplexing and Trimming Adapters from Reads with q2-cutadapt Tutorials demux , tutorial , preview , cutadapt , trim	19	47537	June 1, 2023
How to remove primer and index from demux.qza Technical Support demux , primers , cutadapt , trim	16	813	June 12, 2023
Interpretation of quality plots User Support truncate , trim	10	605	April 20, 2023
Trimming long reads to a shorter region for a methods comparison General Discussion dada2 , trim	0	380	April 18, 2022
data trimming - a) Denoising and truncating User Support trim	3	609	May 16, 2022
Nomenclature issue: trimming vs truncation User Support truncate , trim	11	3279	November 19, 2021
Data loss when trimming ITS User Support its , cutadapt , trim	6	461	October 25, 2021
Debular trim length User Support deblur , trim	4	321	October 18, 2021
DADA2 error (same error for every try) Technical Support dada2 , install , filtering , paired-end , truncate , trim	2	586	July 29, 2021
trimming read files containing a mixture of forward and reverse primers Other Bioinformatics Tools dada2 , primers , trim	4	1326	June 7, 2021
How to determine the values of trim parameters? User Support trim	2	670	March 5, 2021
Lost primers / barcodes information General Discussion trim	4	997	December 3, 2020
Trimming and joining short reads resulted in few merged read on v4 region Technical Support merge , joining , vsearch , trim	6	1798	September 4, 2020
Trimming MiSeq sequencing data individually Technical Support dada2 , quality-filter , trim	4	782	August 22, 2020
Illumina demultiplexed data with inline index sequences (index5+index7) User Support demux , trim	6	1921	February 14, 2020
Trimming length in dada2 in PE data (2 x 300 bp) User Support dada2 , quality-filter , trim	3	1069	January 4, 2020
Would there be a reason to truncate the forward and reverse reads at different points? User Support dada2 , trim	7	1875	October 7, 2019
Low sequence count after DADA2 User Support dada2 , trim	11	2921	February 8, 2019
How to clean Nextera paired-end libraries User Support trim	4	1650	December 28, 2018
Cutadapt trim-paired odd result User Support cutadapt , trim	9	1478	December 18, 2018
Where to trim reads User Support dada2 , quality , trim	25	3971	September 30, 2018
16s V1-V3, V3-V4 and V4-V5 region with 2x300 MiSeq run User Support dada2 , fragment-insertion , trim	10	3860	September 15, 2018
Truncating reads with multiple sequencing runs and different primers User Support dada2 , primers , trim	4	1648	August 11, 2018
DEBLUR -p-trim-length User Support deblur , trim	12	5033	March 30, 2018
Reads processing with different primers User Support dada2 , deblur , feature-classifier , taxonomy , taxa , primers , trim	9	5074	March 22, 2018