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Seeking Advice on Primer and Adapter Trimming for MiSeq Amplicon Sequencing Data Using Cutadapt
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0
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122
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June 4, 2024
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How much do i have to trimming the dada2
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4
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168
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June 14, 2024
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I fell into the swamp of 273bp after trimming adapters and primers through cutadapt...
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8
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184
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April 18, 2024
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How to trim ransposase Adapters using qiime cutadapt or dada2 ?
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6
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295
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March 1, 2024
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ITS itsxpress trim-unmerged encounters problems
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2
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253
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October 14, 2023
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Deciding trim length for deblur
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3
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308
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September 1, 2023
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Demultiplexing and Trimming Adapters from Reads with q2-cutadapt
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19
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50302
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June 1, 2023
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How to remove primer and index from demux.qza
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16
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1134
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June 12, 2023
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Interpretation of quality plots
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10
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910
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April 20, 2023
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Trimming long reads to a shorter region for a methods comparison
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0
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472
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April 18, 2022
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data trimming - a) Denoising and truncating
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3
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734
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May 16, 2022
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Nomenclature issue: trimming vs truncation
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11
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4313
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November 19, 2021
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Data loss when trimming ITS
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6
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516
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October 25, 2021
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Debular trim length
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4
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374
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October 18, 2021
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DADA2 error (same error for every try)
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2
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649
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July 29, 2021
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trimming read files containing a mixture of forward and reverse primers
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4
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1612
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June 7, 2021
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How to determine the values of trim parameters?
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2
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866
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March 5, 2021
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Lost primers / barcodes information
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4
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1175
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December 3, 2020
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Trimming and joining short reads resulted in few merged read on v4 region
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6
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2029
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September 4, 2020
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Trimming MiSeq sequencing data individually
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4
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884
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August 22, 2020
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Illumina demultiplexed data with inline index sequences (index5+index7)
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6
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2143
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February 14, 2020
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Trimming length in dada2 in PE data (2 x 300 bp)
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3
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1189
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January 4, 2020
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Would there be a reason to truncate the forward and reverse reads at different points?
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7
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2071
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October 7, 2019
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Low sequence count after DADA2
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11
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3100
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February 8, 2019
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How to clean Nextera paired-end libraries
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4
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1793
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December 28, 2018
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Cutadapt trim-paired odd result
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9
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1562
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December 18, 2018
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Where to trim reads
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25
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4385
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September 30, 2018
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16s V1-V3, V3-V4 and V4-V5 region with 2x300 MiSeq run
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10
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4295
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September 15, 2018
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Truncating reads with multiple sequencing runs and different primers
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4
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1752
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August 11, 2018
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DEBLUR -p-trim-length
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12
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5408
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March 30, 2018
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