|
Seeking Advice on Primer and Adapter Trimming for MiSeq Amplicon Sequencing Data Using Cutadapt
|
|
0
|
152
|
June 4, 2024
|
|
How much do i have to trimming the dada2
|
|
4
|
194
|
June 14, 2024
|
|
I fell into the swamp of 273bp after trimming adapters and primers through cutadapt...
|
|
8
|
201
|
April 18, 2024
|
|
How to trim ransposase Adapters using qiime cutadapt or dada2 ?
|
|
6
|
350
|
March 1, 2024
|
|
ITS itsxpress trim-unmerged encounters problems
|
|
2
|
264
|
October 14, 2023
|
|
Deciding trim length for deblur
|
|
3
|
320
|
September 1, 2023
|
|
Demultiplexing and Trimming Adapters from Reads with q2-cutadapt
|
|
19
|
50663
|
June 1, 2023
|
|
How to remove primer and index from demux.qza
|
|
16
|
1174
|
June 12, 2023
|
|
Interpretation of quality plots
|
|
10
|
1004
|
April 20, 2023
|
|
Trimming long reads to a shorter region for a methods comparison
|
|
0
|
485
|
April 18, 2022
|
|
data trimming - a) Denoising and truncating
|
|
3
|
745
|
May 16, 2022
|
|
Nomenclature issue: trimming vs truncation
|
|
11
|
4492
|
November 19, 2021
|
|
Data loss when trimming ITS
|
|
6
|
529
|
October 25, 2021
|
|
Debular trim length
|
|
4
|
384
|
October 18, 2021
|
|
DADA2 error (same error for every try)
|
|
2
|
653
|
July 29, 2021
|
|
trimming read files containing a mixture of forward and reverse primers
|
|
4
|
1648
|
June 7, 2021
|
|
How to determine the values of trim parameters?
|
|
2
|
891
|
March 5, 2021
|
|
Lost primers / barcodes information
|
|
4
|
1195
|
December 3, 2020
|
|
Trimming and joining short reads resulted in few merged read on v4 region
|
|
6
|
2067
|
September 4, 2020
|
|
Trimming MiSeq sequencing data individually
|
|
4
|
908
|
August 22, 2020
|
|
Illumina demultiplexed data with inline index sequences (index5+index7)
|
|
6
|
2174
|
February 14, 2020
|
|
Trimming length in dada2 in PE data (2 x 300 bp)
|
|
3
|
1201
|
January 4, 2020
|
|
Would there be a reason to truncate the forward and reverse reads at different points?
|
|
7
|
2093
|
October 7, 2019
|
|
Low sequence count after DADA2
|
|
11
|
3126
|
February 8, 2019
|
|
How to clean Nextera paired-end libraries
|
|
4
|
1813
|
December 28, 2018
|
|
Cutadapt trim-paired odd result
|
|
9
|
1574
|
December 18, 2018
|
|
Where to trim reads
|
|
25
|
4509
|
September 30, 2018
|
|
16s V1-V3, V3-V4 and V4-V5 region with 2x300 MiSeq run
|
|
10
|
4366
|
September 15, 2018
|
|
Truncating reads with multiple sequencing runs and different primers
|
|
4
|
1767
|
August 11, 2018
|
|
DEBLUR -p-trim-length
|
|
12
|
5451
|
March 30, 2018
|
