Topics tagged filtering

Topic	Replies	Views	Activity
How to filter or reassign taxonomic names in QIIME 2? User Support filtering	1	13	September 2, 2025
DADA2 Filtering Error - Failed to Write Record Technical Support qiime2 , dada2 , filter-features , filtering	20	60	April 3, 2025
Corrupted BIOM export? Technical Support export , filtering , feature-table	3	46	March 28, 2025
Error filtering taxa User Support filtering	4	38	March 25, 2025
Filter kraken2 reports (e.g. before creating feature-tables with bracken) Ideas and Suggestions kraken , filter-samples , filtering	3	190	October 8, 2024
Filtering features User Support filter-features , filtering , taxonomy	3	43	September 29, 2024
filtering data table using CSV file User Support filtering	9	70	September 3, 2024
Filter specific ASVs from feature table User Support filtering , feature-table	2	235	April 20, 2024
DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs) User Support filtering , dada2	4	326	February 29, 2024
Abnormal high percentage of unclassified bacteria User Support filtering , demux , taxonomy , feature-table , dada2 , feature-classifier , diversity	2	326	February 12, 2024
Error message after using ReSCRIPT for filtering for homopolymers Technical Support filtering , rescript	5	219	December 23, 2023
Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy User Support filtering	7	1042	November 18, 2023
Confirmation on code that removes Homopolymers User Support filtering	4	395	September 14, 2023
Error with filter-features-conditionally on picrust2 outputs PICRUSt2 filtering , feature-table , picrust	3	348	August 10, 2023
Getting low feature counts while using dada2 plugin User Support filtering , dada2 , feature-table , filter-features	18	423	June 23, 2023
Filtered OTU table using spike-in mock community to get actual read count User Support filtering	6	359	May 21, 2023
DADA2: losing a lot of reads User Support filtering , dada2	7	609	April 13, 2023
LOW percentage of input merged User Support taxonomy , dada2 , feature-classifier , deblur , metadata , import , install , demux , filtering	5	628	March 27, 2023
Filtering Samples in a Metabarcoding Dataset by Source Without Restarting the Pipeline User Support filtering	2	197	March 21, 2023
How to filter out contamination at samples User Support filter-features , filtering , feature-table , taxonomy	2	664	February 18, 2023
Is my DADA2 outputs nomarl? User Support filtering , import , dada2	3	416	January 16, 2023
Filtering phyloseq object by otu id instead of the target level Other Bioinformatics Tools filtering , phyloseq , feature-table	1	701	October 28, 2022
How to find sample IDs from publicly available fastq.gz General Discussion filter-features , filtering	3	317	August 26, 2022
Qiime filter feature table by sequences Technical Support filtering , feature-table	3	614	September 19, 2022
filtering with metada doesn't work User Support filter-samples , filtering	10	678	July 29, 2022
silva138 16S database contains eukaryota after filtering User Support silva , filtering	3	1689	May 30, 2022
Results after taxonomy filtering User Support filtering	2	288	May 29, 2022
Importing Multiplexed Paired End Sequence With Adaptors --> Demultiplexed Sequences User Support silva , 16s , cutadapt , multiplexed , metadata , filtering , feature-classifier , import , demux	4	1244	December 24, 2021
DADA2 error (same error for every try) Technical Support truncate , paired-end , filtering , trim , install , dada2	2	649	July 29, 2021
What are the criteria for choosing the optimal "--p-min-fold-parent-over-abundance" parameter in dada2? User Support chimera , filtering , dada2	2	788	August 10, 2021