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How to deal with possible cross-contamination by a crucial bacteria
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2
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48
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February 8, 2026
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How to perform filtering step for forward read only analysis?
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14
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144
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January 31, 2026
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Error when collapsing at genus level: Feature IDs missing from taxonomy
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4
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52
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October 26, 2025
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How to filter or reassign taxonomic names in QIIME 2?
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5
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74
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October 12, 2025
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DADA2 Filtering Error - Failed to Write Record
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20
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97
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April 3, 2025
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Corrupted BIOM export?
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3
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81
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March 28, 2025
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Error filtering taxa
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4
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58
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March 25, 2025
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Filter kraken2 reports (e.g. before creating feature-tables with bracken)
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3
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227
|
October 8, 2024
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Filtering features
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3
|
67
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September 29, 2024
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filtering data table using CSV file
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9
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118
|
September 3, 2024
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Filter specific ASVs from feature table
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2
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269
|
April 20, 2024
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DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs)
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4
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369
|
February 29, 2024
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Abnormal high percentage of unclassified bacteria
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2
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348
|
February 12, 2024
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Error message after using ReSCRIPT for filtering for homopolymers
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5
|
243
|
December 23, 2023
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Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy
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7
|
1199
|
November 18, 2023
|
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Confirmation on code that removes Homopolymers
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4
|
425
|
September 14, 2023
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Error with filter-features-conditionally on picrust2 outputs
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3
|
367
|
August 10, 2023
|
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Getting low feature counts while using dada2 plugin
|
|
18
|
444
|
June 23, 2023
|
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Filtered OTU table using spike-in mock community to get actual read count
|
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6
|
408
|
May 21, 2023
|
|
DADA2: losing a lot of reads
|
|
7
|
632
|
April 13, 2023
|
|
LOW percentage of input merged
|
|
5
|
676
|
March 27, 2023
|
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Filtering Samples in a Metabarcoding Dataset by Source Without Restarting the Pipeline
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2
|
223
|
March 21, 2023
|
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How to filter out contamination at samples
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2
|
709
|
February 18, 2023
|
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Is my DADA2 outputs nomarl?
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|
3
|
433
|
January 16, 2023
|
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Filtering phyloseq object by otu id instead of the target level
|
|
1
|
724
|
October 28, 2022
|
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How to find sample IDs from publicly available fastq.gz
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|
3
|
334
|
August 26, 2022
|
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Qiime filter feature table by sequences
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3
|
631
|
September 19, 2022
|
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filtering with metada doesn't work
|
|
10
|
690
|
July 29, 2022
|
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silva138 16S database contains eukaryota after filtering
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3
|
1754
|
May 30, 2022
|
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Results after taxonomy filtering
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|
2
|
302
|
May 29, 2022
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