Topics tagged filtering

Topic	Replies	Views	Activity
How to deal with possible cross-contamination by a crucial bacteria General Discussion filtering , contaminant , decontam	2	48	February 8, 2026
How to perform filtering step for forward read only analysis? User Support filtering , feature-table , filter-features , filter-samples	14	144	January 31, 2026
Error when collapsing at genus level: Feature IDs missing from taxonomy Technical Support filtering , taxonomy , collapse	4	52	October 26, 2025
How to filter or reassign taxonomic names in QIIME 2? User Support filtering	5	74	October 12, 2025
DADA2 Filtering Error - Failed to Write Record Technical Support dada2 , filtering , filter-features , qiime2	20	97	April 3, 2025
Corrupted BIOM export? Technical Support filtering , export , feature-table	3	81	March 28, 2025
Error filtering taxa User Support filtering	4	58	March 25, 2025
Filter kraken2 reports (e.g. before creating feature-tables with bracken) Ideas and Suggestions filtering , filter-samples , kraken	3	227	October 8, 2024
Filtering features User Support filtering , taxonomy , filter-features	3	67	September 29, 2024
filtering data table using CSV file User Support filtering	9	118	September 3, 2024
Filter specific ASVs from feature table User Support filtering , feature-table	2	269	April 20, 2024
DADA2, odd results from denoising stats (varying input passed filter, low number of reads, low % of input merged and ASVs) User Support dada2 , filtering	4	369	February 29, 2024
Abnormal high percentage of unclassified bacteria User Support dada2 , filtering , demux , feature-classifier , taxonomy , feature-table , diversity	2	348	February 12, 2024
Error message after using ReSCRIPT for filtering for homopolymers Technical Support filtering , rescript	5	243	December 23, 2023
Removal of mitochondria and chloroplast - filter sequence vs filter taxonomy User Support filtering	7	1199	November 18, 2023
Confirmation on code that removes Homopolymers User Support filtering	4	425	September 14, 2023
Error with filter-features-conditionally on picrust2 outputs PICRUSt2 filtering , feature-table , picrust	3	367	August 10, 2023
Getting low feature counts while using dada2 plugin User Support dada2 , filtering , feature-table , filter-features	18	444	June 23, 2023
Filtered OTU table using spike-in mock community to get actual read count User Support filtering	6	408	May 21, 2023
DADA2: losing a lot of reads User Support dada2 , filtering	7	632	April 13, 2023
LOW percentage of input merged User Support dada2 , install , deblur , filtering , metadata , import , demux , feature-classifier , taxonomy	5	676	March 27, 2023
Filtering Samples in a Metabarcoding Dataset by Source Without Restarting the Pipeline User Support filtering	2	223	March 21, 2023
How to filter out contamination at samples User Support filtering , taxonomy , feature-table , filter-features	2	709	February 18, 2023
Is my DADA2 outputs nomarl? User Support dada2 , filtering , import	3	433	January 16, 2023
Filtering phyloseq object by otu id instead of the target level Other Bioinformatics Tools filtering , feature-table , phyloseq	1	724	October 28, 2022
How to find sample IDs from publicly available fastq.gz General Discussion filtering , filter-features	3	334	August 26, 2022
Qiime filter feature table by sequences Technical Support filtering , feature-table	3	631	September 19, 2022
filtering with metada doesn't work User Support filtering , filter-samples	10	690	July 29, 2022
silva138 16S database contains eukaryota after filtering Silva filtering , silva	3	1754	May 30, 2022
Results after taxonomy filtering User Support filtering	2	302	May 29, 2022