Topics tagged collapse

Topic	Replies	Views	Activity
Error when collapsing at genus level: Feature IDs missing from taxonomy Technical Support filtering , taxonomy , collapse	4	52	October 26, 2025
Taxa-collapse: Retaining the last taxa level User Support collapse , taxa , ancom-bc	3	89	April 25, 2025
Using qiime taxa collapse Before Logistic Regression: Is It Appropriate? User Support collapse	2	54	April 18, 2025
qiime taxa-collapse problem - sequence item 0: expected str instance, float found User Support taxonomy , collapse , ancom	8	1981	February 2, 2023
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	4	462	August 23, 2021
Problem with taxa-collapse: Please provide a DataFrame with a string-based Index User Support taxonomy , collapse , taxa	4	1354	April 10, 2020
Taxa collapse error: missing IDs from taxonomy file Technical Support collapse	1	574	August 23, 2019
Problems with the taxonomy file: Different tree taxonomy of Bacteroides at genus level, and duplicate results for different OTU.IDs User Support feature-classifier , taxonomy , collapse , ids	4	1134	June 1, 2019
Gneiss on collapsed FeatureTable User Support collapse , gneiss	15	1850	May 21, 2018
Taxa bar plot; Plugin error 'Float64Index' User Support collapse , pending-development , taxa , barplot	8	1168	April 30, 2018
Is there a way to group a feature table by more than one metadata column? User Support collapse	4	1918	April 9, 2018
Number of Features per Taxon User Support taxonomy , collapse , pending-development	7	2126	February 23, 2018
Help with Abundance Table User Support taxonomy , collapse	8	2104	September 8, 2017
How to make rarefied taxonomy tables at each taxonomic level? User Support taxonomy , collapse	2	1742	August 26, 2017
How can I create taxonomy table with frequency? User Support export , taxonomy , collapse	4	2117	August 25, 2017