Topics tagged filter-features

Topic	Replies	Views	Activity
Guidance for feature filtering step of qiime2 User Support feature-table , filter-features	4	47	November 19, 2025
DADA2 Filtering Error - Failed to Write Record Technical Support dada2 , filtering , filter-features , qiime2	20	78	April 3, 2025
CFProperty ListCreateFrom XMLData: Old-style plist parser: missing semicolon in dictionary Technical Support filter-features	4	113	March 14, 2025
Filtering features User Support filtering , taxonomy , filter-features	3	54	September 29, 2024
Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty. User Support phylogeny , filter-features	3	41	August 15, 2024
I lost 90% features after removing singletons by '--p-min-samples 2' User Support feature-table , filter-features	6	283	July 8, 2024
how to decide feature tabel filtering min,max and sampling depth values User Support feature-table , filter-features	2	181	February 29, 2024
Problem with filter-seqs: Filter features from sequences User Support filter-features	5	332	December 31, 2023
Getting low feature counts while using dada2 plugin User Support dada2 , filtering , feature-table , filter-features	18	438	June 23, 2023
How to filter out contamination at samples User Support filtering , taxonomy , feature-table , filter-features	2	689	February 18, 2023
a sample with low reads General Discussion filter-features	2	438	September 28, 2022
Remove features based on per-sample frequency User Support filter-features	3	287	September 29, 2022
How to find sample IDs from publicly available fastq.gz General Discussion filtering , filter-features	3	321	August 26, 2022
filter samples based on one sample User Support filter-features	2	293	June 22, 2022
Every feature in only 1 sample Technical Support dada2 , feature-classifier , feature-table , relative-frequency , filter-features , table	2	604	April 24, 2022
Filter-features and important steps for core-features User Support core-features , filter-features	7	1151	January 17, 2022
Filtering multiple taxa with exact substrings User Support taxonomy , filter-features	2	616	December 25, 2021
Filter features conditionally not working as intended Technical Support feature-table , filter-features	8	1129	September 29, 2021
An error was encountered while running qiime feature-table filter-seqs User Support feature-table , vsearch , filter-features	3	754	May 11, 2021
Issue filtering multiple specific taxa out of feature table User Support filtering , filter-features	5	1618	March 20, 2021
differencial abundance with ANCOM Technical Support dada2 , filtering , demux , feature-classifier , taxonomy , feature-table , filter-features	4	775	March 16, 2021
How to obtain machine-readable total observation counts? Technical Support feature-table , filter-features	5	755	October 28, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	4	1205	September 12, 2020
Filter taxa/samples and re-running alpha and beta diversity General Discussion filter-features , filter-samples	6	1307	July 9, 2020
Sampling depth - Is my sampling depth ideal General Discussion filter-features , filter-samples	6	4047	June 15, 2020
Filter-features without removing samples with zero counts from the output for posterior taxa-plots User Support filter-features	2	487	June 4, 2020
Filter to identify unique ASVs in one sample compared to another collected from the same person! General Discussion filter-features	1	632	April 24, 2020
Removal of Chloroplast and Mitochondria (Verification of pipeline) User Support taxonomy , filter-features	6	4048	August 31, 2019
Filter-features not filtering features from a metadata Technical Support filter-features	5	1533	March 11, 2019