Topics tagged filter-features

Topic	Replies	Views	Activity
How to perform filtering step for forward read only analysis? User Support filtering , feature-table , filter-features , filter-samples	14	148	January 31, 2026
Guidance for feature filtering step of qiime2 User Support feature-table , filter-features	5	94	December 20, 2025
DADA2 Filtering Error - Failed to Write Record Technical Support dada2 , filtering , filter-features , qiime2	20	98	April 3, 2025
CFProperty ListCreateFrom XMLData: Old-style plist parser: missing semicolon in dictionary Technical Support filter-features	4	130	March 14, 2025
Filtering features User Support filtering , taxonomy , filter-features	3	67	September 29, 2024
Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty. User Support phylogeny , filter-features	3	42	August 15, 2024
I lost 90% features after removing singletons by '--p-min-samples 2' User Support feature-table , filter-features	6	308	July 8, 2024
how to decide feature tabel filtering min,max and sampling depth values User Support feature-table , filter-features	2	189	February 29, 2024
Problem with filter-seqs: Filter features from sequences User Support filter-features	5	341	December 31, 2023
Getting low feature counts while using dada2 plugin User Support dada2 , filtering , feature-table , filter-features	18	444	June 23, 2023
How to filter out contamination at samples User Support filtering , taxonomy , feature-table , filter-features	2	709	February 18, 2023
a sample with low reads General Discussion filter-features	2	441	September 28, 2022
Remove features based on per-sample frequency User Support filter-features	3	292	September 29, 2022
How to find sample IDs from publicly available fastq.gz General Discussion filtering , filter-features	3	334	August 26, 2022
filter samples based on one sample User Support filter-features	2	295	June 22, 2022
Every feature in only 1 sample Technical Support dada2 , feature-classifier , feature-table , relative-frequency , filter-features , table	2	605	April 24, 2022
Filter-features and important steps for core-features User Support core-features , filter-features	7	1177	January 17, 2022
Filtering multiple taxa with exact substrings User Support taxonomy , filter-features	2	624	December 25, 2021
Filter features conditionally not working as intended Technical Support feature-table , filter-features	8	1135	September 29, 2021
An error was encountered while running qiime feature-table filter-seqs User Support feature-table , vsearch , filter-features	3	759	May 11, 2021
Issue filtering multiple specific taxa out of feature table User Support filtering , filter-features	5	1623	March 20, 2021
differencial abundance with ANCOM Technical Support dada2 , filtering , demux , feature-classifier , taxonomy , feature-table , filter-features	4	784	March 16, 2021
How to obtain machine-readable total observation counts? Technical Support feature-table , filter-features	5	768	October 28, 2020
gathering a random subset of reference sequences User Support filtering , filter-features , best-of-the-forum	4	1210	September 12, 2020
Filter taxa/samples and re-running alpha and beta diversity General Discussion filter-features , filter-samples	6	1318	July 9, 2020
Sampling depth - Is my sampling depth ideal General Discussion filter-features , filter-samples	6	4116	June 15, 2020
Filter-features without removing samples with zero counts from the output for posterior taxa-plots User Support filter-features	2	495	June 4, 2020
Filter to identify unique ASVs in one sample compared to another collected from the same person! General Discussion filter-features	1	650	April 24, 2020
Removal of Chloroplast and Mitochondria (Verification of pipeline) User Support taxonomy , filter-features	6	4085	August 31, 2019
Filter-features not filtering features from a metadata Technical Support filter-features	5	1545	March 11, 2019