Error when trying to install qiime2R package

Hi there! I'm trying to install the qiime2R package but I'm getting the following warning message:

Warning messages:
1: In i.p(...) : installation of package ‘rhdf5’ had non-zero exit status
2: In i.p(...) :
  installation of package ‘biomformat’ had non-zero exit status
3: In i.p(...) :
  installation of package ‘phyloseq’ had non-zero exit status
4: In i.p(...) :
  installation of package ‘/var/folders/c0/k9ryl9s90_99v68fd2698j2m0000gn/T//RtmpLs5ipM/file81e95413f494/qiime2R_0.99.6.tar.gz’ had non-zero exit status

Does anyone know what this means and how to fix?

Hi @lewcine,
Welcome to the :qiime2: forum!

These errors mean that you are missing the dependencies 'rhdf5', 'biomformat', 'phyloseq' to install qiime2R.
This similar post shared a work around you might try.
Let me know if you still run into trouble after you get those dependencies installed!

--Hannah

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