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Combining 16S (V4) and shotgun on one Greengenes2 tree for UniFrac — namespace mismatch (2024.09)
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2
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74
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August 19, 2026
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Functional annotation using Greengenes2
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5
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147
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July 2, 2026
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DeepTaxa, a QIIME 2 plugin for 16S taxonomy
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1
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182
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July 2, 2026
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Greengenes2 unclassified reads resolved by degenerate base change (H→N) in cutadapt 806R primer — why would this affect classification but not rep-seq statistics?
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2
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114
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April 8, 2026
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Integrating V3-V4 and V4 16S datasets for large-scale meta-analysis: Is Greengenes2 the optimal choice for cross-region alignment?
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1
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189
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March 6, 2026
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Difficulty with Greengenes2 2022.10
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11
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208
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January 29, 2026
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Comparing 16S and shotgun metagenomic data with greengenes2
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3
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240
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January 20, 2026
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Greengenes2 and RESCRIPt
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2
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167
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July 9, 2025
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Greengenes2 vs. SILVA
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0
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249
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July 3, 2025
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train a sequence classifier on your own data
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2
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114
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June 27, 2025
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GG2 with V4-V5 primers 515FB-926R vs 2021 Silva
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1
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123
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June 6, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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341
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March 27, 2025
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Missing species sequence on Greengenes2 2024.09
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2
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110
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March 18, 2025
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Am I overthinking this? Dada2 and Greengenes2
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5
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159
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March 17, 2025
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Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
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5
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342
|
March 17, 2025
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Greengenes 2022.10 phylogeny files
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1
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148
|
March 3, 2025
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Greengenes2 2024.09
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0
|
5007
|
October 8, 2024
|
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Linking Greengenes2 to another feature table
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5
|
169
|
January 14, 2025
|
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Introducing Greengenes2 2022.10
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71
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32524
|
October 11, 2024
|
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Trim sequences before using Greengenes2 database?
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1
|
85
|
December 17, 2024
|
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gg-13-8-99-515-806-nb-classifier.qza is not up-to-date
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8
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575
|
December 13, 2024
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Chloroplast in Greegnenes 2 2022.10
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3
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123
|
December 9, 2024
|
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Greengenes 2 with 515F-926R primers
|
|
1
|
117
|
November 13, 2024
|
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Classifier confidence of 1 for all features
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|
3
|
107
|
December 2, 2024
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Arbitrary ASV fragment placement in Greengenes2
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0
|
172
|
September 6, 2024
|
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Unclassified at the phylum level
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|
5
|
365
|
September 4, 2024
|
|
Best Discussion Forum for Greengenes 2?
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7
|
238
|
August 28, 2024
|
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Database With Best Accuracy at Genus Level for Human Microbiome?
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8
|
385
|
August 28, 2024
|
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Sequence and taxonomy file for GG2
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8
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277
|
June 15, 2024
|
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Greengenes 2 confidence threshold
|
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4
|
260
|
June 13, 2024
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