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Greengenes2 unclassified reads resolved by degenerate base change (H→N) in cutadapt 806R primer — why would this affect classification but not rep-seq statistics?
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2
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44
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April 8, 2026
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Integrating V3-V4 and V4 16S datasets for large-scale meta-analysis: Is Greengenes2 the optimal choice for cross-region alignment?
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1
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91
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March 6, 2026
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Difficulty with Greengenes2 2022.10
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12
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124
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March 1, 2026
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Comparing 16S and shotgun metagenomic data with greengenes2
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4
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117
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January 20, 2026
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Greengenes2 and RESCRIPt
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3
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135
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August 9, 2025
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Greengenes2 vs. SILVA
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0
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170
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July 3, 2025
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train a sequence classifier on your own data
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3
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83
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July 28, 2025
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GG2 with V4-V5 primers 515FB-926R vs 2021 Silva
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2
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98
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July 7, 2025
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Why do we get higher species level assignment with an older GTDB classifier than with a more recent one?
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8
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269
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March 27, 2025
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Missing species sequence on Greengenes2 2024.09
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2
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73
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March 18, 2025
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Am I overthinking this? Dada2 and Greengenes2
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6
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140
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April 18, 2025
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Issue with Taxonomic Classification Greengene2 for 16S V4 region - Unassigned data
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6
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274
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April 17, 2025
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Greengenes 2022.10 phylogeny files
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1
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123
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March 3, 2025
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Greengenes2 2024.09
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3
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4067
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March 3, 2025
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Linking Greengenes2 to another feature table
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6
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126
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February 14, 2025
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Introducing Greengenes2 2022.10
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83
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30813
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January 9, 2025
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Trim sequences before using Greengenes2 database?
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2
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62
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January 18, 2025
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gg-13-8-99-515-806-nb-classifier.qza is not up-to-date
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9
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439
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January 13, 2025
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Chloroplast in Greegnenes 2 2022.10
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4
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90
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January 10, 2025
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Greengenes 2 with 515F-926R primers
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2
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89
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January 3, 2025
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Classifier confidence of 1 for all features
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4
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81
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January 3, 2025
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Arbitrary ASV fragment placement in Greengenes2
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0
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138
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September 6, 2024
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Unclassified at the phylum level
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5
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268
|
September 4, 2024
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Best Discussion Forum for Greengenes 2?
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7
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189
|
August 28, 2024
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Database With Best Accuracy at Genus Level for Human Microbiome?
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8
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316
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August 28, 2024
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Sequence and taxonomy file for GG2
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8
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231
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June 15, 2024
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Greengenes 2 confidence threshold
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4
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220
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June 13, 2024
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Weird letters and numbers after taxa ID - f__Bacillaceae_H_294103
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7
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236
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June 29, 2024
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taxa collapse and Greengenes2 taxonomy confusion
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6
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286
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May 18, 2024
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Handling polyphyletic taxa in Greengenes2
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4
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233
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April 30, 2024
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