Topics tagged phylogeny

Topic	Replies	Views	Activity
Remove Unassigned ASV for Tree construction General Discussion phylogeny	3	73	December 16, 2025
ITS phylogeny using iq-tree Technical Support phylogeny , ghost-tree	4	165	November 13, 2025
how to phylogenetically analyse 16S genes recovered from metagenome? General Discussion taxonomy , phylogeny	2	106	March 3, 2025
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	71	31924	October 11, 2024
Help with filtering phylogeny based on feature table: Not a single fragment of your table is part of your tree. The resulting table would be empty. User Support phylogeny , filter-features	2	50	July 15, 2024
Phylogeny error Technical Support phylogeny	4	144	June 25, 2024
Core-metrics (Plugin error from diversity) Technical Support phylogeny , core-metrics , alpha	8	737	March 1, 2024
Error occured while running for MAFFT in qiime2 Technical Support phylogeny , tree	7	263	February 22, 2024
ASVs of the same genus in different branches on the phylogenetic tree User Support taxonomy , phylogeny , tree	2	245	February 19, 2024
qiime vsearch cluster-features-open-reference issue User Support feature-table , phylogeny , vsearch , qiime2	11	542	February 15, 2024
Generating phylogenic tree for diversity analyses User Support phylogeny	4	247	November 20, 2023
Greengenes2 feature in table not found in tree during beta-rarefaction Technical Support taxonomy , phylogeny , unifrac	6	582	September 5, 2023
Visualizing phylogenetic trees General Discussion phylogeny	2	1341	May 15, 2023
plugin error from phylogeny - no such file or directory: mafft Technical Support mafft , phylogeny	4	740	May 10, 2023
UniFrac and Phylogenetic Methods with Full-length 16S-ITS-23S Sequences General Discussion phylogeny , unifrac	3	1124	March 29, 2023
q2-phylogeny mafft job "killed" User Support phylogeny	10	964	February 21, 2023
Phylogenetic tree tools User Support phylogeny	10	1664	February 10, 2023
plugin error from phylogeny raxml (default): returned non-zero exit status 255 Technical Support phylogeny , raxml	6	1108	January 3, 2023
Make phylogenetic tree based on sequence User Support dada2 , phylogeny	4	1341	December 5, 2022
Qiime 2 version of Qiime1 "pick_rep_set.py" for picking representative OTU sequences Technical Support taxonomy , phylogeny , otus	3	396	November 22, 2022
Converting file from .tre to .nwk? Other Bioinformatics Tools dada2 , taxonomy , phylogeny	4	2959	August 28, 2022
q2-phylogeny for vertebrates User Support phylogeny , fragment-insertion	4	866	August 25, 2022
Phylogenetic analysis of Nanopore 16S reads. How many subsampled reads will do? User Support phylogeny , nanopore	7	1323	July 30, 2022
Plugin error from phylogeny qiime2-2022.2 Technical Support phylogeny	1	849	July 28, 2022
Plugin error from diversity to get alpha and beta diversity Technical Support phylogeny , core-metrics , alpha	2	953	July 21, 2022
Bulding a phylogeny using taxonomy User Support taxonomy , phylogeny	5	942	March 29, 2022
qiime phylogeny General Discussion phylogeny	1	790	March 28, 2022
Changing tip labels on rooted-tree.qza from sequence identifiers to SILVA taxa annotations using R Other Bioinformatics Tools taxonomy , phylogeny	10	2142	March 23, 2022
PD Mouse tutorial error in generating phylogenetic tree Technical Support phylogeny	5	661	December 21, 2021
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	1	471	July 22, 2021