Topics tagged collapse

Topic	Replies	Views	Activity
Error when collapsing at genus level: Feature IDs missing from taxonomy Technical Support filtering , taxonomy , collapse	3	73	September 24, 2025
Taxa-collapse: Retaining the last taxa level User Support collapse , taxa , ancom-bc	2	150	March 24, 2025
Using qiime taxa collapse Before Logistic Regression: Is It Appropriate? User Support collapse	1	72	March 18, 2025
qiime taxa-collapse problem - sequence item 0: expected str instance, float found User Support taxonomy , collapse , ancom	7	2026	January 2, 2023
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	1	487	July 22, 2021
Problem with taxa-collapse: Please provide a DataFrame with a string-based Index User Support taxonomy , collapse , taxa	3	1375	March 10, 2020
Taxa collapse error: missing IDs from taxonomy file Technical Support collapse	1	582	August 23, 2019
Problems with the taxonomy file: Different tree taxonomy of Bacteroides at genus level, and duplicate results for different OTU.IDs User Support feature-classifier , taxonomy , collapse , ids	3	1156	May 1, 2019
Gneiss on collapsed FeatureTable User Support collapse , gneiss	10	1888	April 19, 2018
Taxa bar plot; Plugin error 'Float64Index' User Support collapse , pending-development , taxa , barplot	3	1180	March 29, 2018
Is there a way to group a feature table by more than one metadata column? User Support collapse	1	1940	March 8, 2018
Number of Features per Taxon User Support taxonomy , collapse , pending-development	6	2153	January 22, 2018
Help with Abundance Table User Support taxonomy , collapse	7	2150	August 8, 2017
How to make rarefied taxonomy tables at each taxonomic level? User Support taxonomy , collapse	1	1763	July 25, 2017
How can I create taxonomy table with frequency? User Support export , taxonomy , collapse	2	2137	July 6, 2017