Topics tagged greengenes

Topic	Replies	Views	Activity
Difficulty assigning taxonomy to cyanobacterial ASVs Silva taxonomy , greengenes , silva , ncbi	2	122	June 5, 2025
Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases Silva feature-classifier , greengenes , silva	7	403	March 16, 2025
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	71	32720	October 11, 2024
gg-13-8-99-515-806-nb-classifier.qza is not up-to-date Technical Support feature-classifier , greengenes , greengenes2	8	592	December 13, 2024
Best Discussion Forum for Greengenes 2? General Discussion greengenes , ribosomal-database , greengenes2	7	244	August 28, 2024
Database With Best Accuracy at Genus Level for Human Microbiome? General Discussion greengenes , ncbi , rdp , greengenes2	8	400	August 28, 2024
Reconciling 16s Databases in a Single Pipeline Silva greengenes , silva , 16s , ncbi , rdp	5	315	August 28, 2024
How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022?? Library Support feature-classifier , taxonomy , greengenes	9	1494	June 20, 2024
train a greengenes 2022 classifier for forward reads only Technical Support feature-classifier , greengenes	4	470	December 7, 2023
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	3	443	March 30, 2023
Alternative methods to download Greengenes 16S rRNA 13_8? Technical Support greengenes	1	1259	February 20, 2023
Pre-trained Classifier of V3-V4 region with gg-99 (scikit-learn (0.24.1)) Community Contributions feature-classifier , greengenes , v3v4	0	1103	February 23, 2022
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	1	491	July 22, 2021
What's the difference between ;__ and ;g__ in Greengene database? User Support greengenes	2	2405	December 4, 2020
Resources for using classify-consensus-blast on 16S data Silva feature-classifier , taxonomy , greengenes , silva	3	1593	July 7, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? Silva taxonomy , greengenes , silva	8	3066	March 6, 2020
Greengenes Versus Silva Silva greengenes , silva	3	2821	January 29, 2020
Importing 13_8 Greengenes database for training classifier User Support import , feature-classifier , greengenes	1	2126	October 22, 2019
Qiime2 2018.4 and 2018.11 greengene User Support greengenes	3	2264	December 4, 2018
Finding the right greengenes files for training a classifier User Support feature-classifier , greengenes	1	4236	July 24, 2018
Greengenes Tree Download With Branch Lengths User Support taxonomy , greengenes	4	2020	March 7, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support greengenes , otus	1	1430	February 23, 2018
Loading Greengenes tree in iTOL User Support greengenes , tree , itol	10	7028	February 13, 2018
How to map SILVA and GG 13_8 ids to NCBI or IMG ids? Silva greengenes , silva	4	2437	February 5, 2018
Combine different reference sequences databases Silva feature-classifier , taxonomy , greengenes , silva , unite	1	1988	February 3, 2018
Feature-classifier error during training User Support feature-classifier , taxonomy , greengenes	8	2136	January 21, 2018
SILVA vs Greengenes Silva greengenes , silva	1	2443	January 3, 2018
What is the difference between Greengenes and SILVA? Silva greengenes , silva	4	13876	October 27, 2017
Classifier Training Questions User Support feature-classifier , taxonomy , greengenes	2	3959	September 7, 2017
Training new feature classifier Silva feature-classifier , taxonomy , greengenes , silva	4	3321	August 23, 2017