Topics tagged greengenes

Topic	Replies	Views	Activity
Difficulty assigning taxonomy to cyanobacterial ASVs Silva taxonomy , greengenes , silva , ncbi	2	84	June 5, 2025
Comparison of OTU Identifications with Silva 138.1 and Greengenes 2022.10 databases Silva feature-classifier , greengenes , silva	7	312	March 16, 2025
Introducing Greengenes2 2022.10 Community Contributions taxonomy , phylogeny , greengenes , greengenes2	83	31068	January 9, 2025
gg-13-8-99-515-806-nb-classifier.qza is not up-to-date Technical Support feature-classifier , greengenes , greengenes2	9	456	January 13, 2025
Best Discussion Forum for Greengenes 2? General Discussion greengenes , ribosomal-database , greengenes2	7	199	August 28, 2024
Database With Best Accuracy at Genus Level for Human Microbiome? General Discussion greengenes , ncbi , rdp , greengenes2	8	331	August 28, 2024
Reconciling 16s Databases in a Single Pipeline Silva greengenes , silva , 16s , ncbi , rdp	5	244	August 28, 2024
How to train the classifier for V3-V4 region with 99% identity using full length seuqnces from new relase of GreenGenes-2022?? Library Support feature-classifier , taxonomy , greengenes	9	1418	June 20, 2024
train a greengenes 2022 classifier for forward reads only Technical Support feature-classifier , greengenes	5	404	January 7, 2024
issues moving between greengenes classification and diversity metrics User Support feature-classifier , taxonomy , greengenes , otus , tree	4	397	April 30, 2023
Alternative methods to download Greengenes 16S rRNA 13_8? Technical Support greengenes	2	1191	March 23, 2023
Pre-trained Classifier of V3-V4 region with gg-99 (scikit-learn (0.24.1)) Community Contributions feature-classifier , greengenes , v3v4	0	1085	February 23, 2022
Plugin error from diversity-lib: The table does not appear to be completely represented by the phylogeny Technical Support taxonomy , collapse , phylogeny , greengenes	4	468	August 23, 2021
What's the difference between ;__ and ;g__ in Greengene database? User Support greengenes	3	2364	January 4, 2021
Resources for using classify-consensus-blast on 16S data Silva feature-classifier , taxonomy , greengenes , silva	4	1545	August 8, 2020
Why does Greengenes assign more features at the class and order ranks than Silva? Silva taxonomy , greengenes , silva	8	3012	March 6, 2020
Greengenes Versus Silva Silva greengenes , silva	3	2759	January 29, 2020
Importing 13_8 Greengenes database for training classifier User Support import , feature-classifier , greengenes	2	2103	November 22, 2019
Qiime2 2018.4 and 2018.11 greengene User Support greengenes	4	2238	January 4, 2019
Finding the right greengenes files for training a classifier User Support feature-classifier , greengenes	4	4193	August 25, 2018
Greengenes Tree Download With Branch Lengths User Support taxonomy , greengenes	5	1985	April 7, 2018
I want to change my OTU id into gg_13_8 OTU ID User Support greengenes , otus	2	1423	March 26, 2018
Loading Greengenes tree in iTOL User Support greengenes , tree , itol	11	6834	March 17, 2018
How to map SILVA and GG 13_8 ids to NCBI or IMG ids? Silva greengenes , silva	5	2405	March 8, 2018
Combine different reference sequences databases Silva feature-classifier , taxonomy , greengenes , silva , unite	2	1960	March 6, 2018
Feature-classifier error during training User Support feature-classifier , taxonomy , greengenes	9	2077	February 22, 2018
SILVA vs Greengenes Silva greengenes , silva	2	2410	February 3, 2018
What is the difference between Greengenes and SILVA? Silva greengenes , silva	5	13723	November 27, 2017
Classifier Training Questions User Support feature-classifier , taxonomy , greengenes	3	3930	October 8, 2017
Training new feature classifier Silva feature-classifier , taxonomy , greengenes , silva	5	3276	September 23, 2017