Ryuk
(Zeyu Jin)
November 27, 2020, 8:18am
1
Hi everyone,
When I used greengene for taxonomy classification, the results contains results as follows:
k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__[Paraprevotellaceae];__
k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__[Paraprevotellaceae];g__
I am confused with the difference between these two results. Also, I don't know what the stand for. I've searched online but got no answers, so I posted my questions here for help. It would be really appreciated if anyone could give me the answer.
1 Like
SoilRotifer
(Mike Robeson)
November 30, 2020, 10:11pm
2
Hi @Ryuk ,
If you search the forum you'll find many existing solutions to this question. Here are a couple:
Hello
Looking at the .csv file exported (genera level) from the taxonomy barplot I got confused: a lot of the taxa are not classified down to genus level, which I understand, but then same taxa classified only to a certain level, let’s say class level, appear twice - e.g.
k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria; __ ; __ ; __ and k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__;f__;g__
And this appears in several instances. Why is that? I am trying to produce a filtered ba…
Hello All,
Can someone remind me the meaning and difference again between different OTUs assigned like the following:
k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae
k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__; s__
k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides
k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroida…
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3 Likes
Ryuk
(Zeyu Jin)
December 4, 2020, 6:14am
4
@SoilRotifer Thank you very much!
1 Like
system
(system)
Closed
January 4, 2021, 12:14pm
5
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