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Quality Scores too high for Qiime2
|
|
2
|
78
|
September 23, 2025
|
|
vsearch unrecognized option '--qseqout'
|
|
3
|
65
|
July 1, 2025
|
|
DeprecationWarning using uchime-stats.qza
|
|
1
|
55
|
January 22, 2025
|
|
denoising and quality filterin
|
|
3
|
50
|
November 27, 2024
|
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Make OTU cluster from SILVAdatabase
|
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2
|
89
|
October 2, 2024
|
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concerns vsearch clustering speed
|
|
4
|
194
|
August 5, 2024
|
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fungal ITS analysis with QIIME2: current recommended workflow?
|
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6
|
2311
|
July 22, 2024
|
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Duplicates causing issues, how to handle merging and clustering?
|
|
2
|
120
|
July 10, 2024
|
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How to import fasta files which have undergone vsearch based QC
|
|
1
|
110
|
June 4, 2024
|
|
Vsearch dereplication plugin error
|
|
3
|
222
|
April 17, 2024
|
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qiime vsearch merge-pairs Missing option and Command not found
|
|
6
|
521
|
March 28, 2024
|
|
Low percentage of matching unique query sequences in the process of greengenes2 non-v4-16s action
|
|
3
|
217
|
February 27, 2024
|
|
qiime vsearch cluster-features-open-reference issue
|
|
11
|
542
|
February 15, 2024
|
|
Preparing mixed orientation reads for dada2
|
|
5
|
900
|
January 26, 2024
|
|
Clustering ASVs into OTUs
|
|
2
|
280
|
January 5, 2024
|
|
Frequency per feature is 1 - each read is being considered as unique feature
|
|
9
|
422
|
November 8, 2023
|
|
Looking for advice on poor merging results with vsearch
|
|
9
|
582
|
October 19, 2023
|
|
Galaxy - couldn't find vsearch join pairs
|
|
3
|
232
|
August 6, 2023
|
|
which ASVs are within an OTU?
|
|
1
|
222
|
August 1, 2023
|
|
Taxonomy consensus column
|
|
3
|
675
|
April 19, 2023
|
|
vsearch dereplicate problem
|
|
4
|
433
|
April 17, 2023
|
|
Merge feature tables before or after OTU generation from qiime dada2 output?
|
|
2
|
302
|
March 30, 2023
|
|
How to resolve missing OTUs in Qiime2 analysis despite finding through BLAST?
|
|
4
|
572
|
March 28, 2023
|
|
Good classification, poor clustering
|
|
2
|
286
|
March 13, 2023
|
|
How cluster ASV with different length in OTU ?
|
|
7
|
995
|
February 6, 2023
|
|
vsearch cluster-features-de-novo is taking too long
|
|
5
|
734
|
December 13, 2022
|
|
Didn't use vsearch but its citation is showing up in my provenance
|
|
3
|
429
|
October 18, 2022
|
|
vsearch classification error
|
|
16
|
755
|
August 23, 2022
|
|
Guidance modifying q2-vsearch to recover UC file
|
|
2
|
784
|
June 2, 2020
|
|
after vsearch join pairs ,,I lost many reads
|
|
1
|
240
|
August 5, 2022
|
