Topics tagged rescript

Topic	Replies	Views	Activity
extract-seq-segments: number of reads vs accuracy of reads. User Support classifier , taxonomy , rescript	3	80	August 19, 2026
Using RESCRIPt's 'extract-seq-segments' to extract reference sequences without PCR primer pairs. Tutorials its , trnl , co1 , ssu , lsu , rescript , taxonomy , tutorial , feature-classifier	5	6811	November 14, 2023
Train a taxonomy classifier by extracting an amplicon region from a curated sequence alignment (using SILVA as an example). Tutorials feature-classifier , silva , taxonomy , rescript , alignment , tutorial	0	123	August 12, 2026
RESCRIPt-evaluate Plugins feature-classifier , taxonomy , rescript , rescript-evaluate	0	105	July 27, 2026
RESCRIPt 'get-ncbi-genomes' and 'get-ncbi-data-protein' functions not supported? Technical Support rescript	2	79	February 19, 2026
"over-classification" of ASV taxonomy? User Support dereplicate , rescript , taxonomy , naivebayes , feature-classifier	2	106	January 9, 2026
Evaluate custom taxonomic classifier with RESCRIPt? User Support rescript , unite , taxonomy , feature-classifier	5	210	November 27, 2025
Error when using qiime taxa barplot after fragment-insertion Technical Support rescript , taxa , barplot , fragment-insertion	8	142	August 13, 2025
Greengenes2 and RESCRIPt User Support greengenes2 , taxonomy , rescript , feature-classifier	2	167	July 9, 2025
SILVA 138.1 classifier trained on version 2023.5 and used in 2024.5 User Support rescript , feature-classifier	2	274	July 3, 2025
vsearch unrecognized option '--qseqout' Technical Support vsearch , rescript	3	76	July 1, 2025
Dealing with Poor Taxonomic Assignments User Support taxonomy , rescript , feature-classifier	6	225	June 24, 2025
Processing, filtering, and evaluating the SILVA database (and other reference sequence data) with RESCRIPt Tutorials plugin-development , feature-classifier , tutorials , taxonomy , rescript	8	66783	February 17, 2023
mismatch between taxonomy and sequence data that download from NCBI using qiime rescript get-ncbi-data Technical Support ncbi , taxonomy , rescript	3	81	May 19, 2025
RESCRIPt GTDB 226.0 Technical Support taxonomy , rescript	2	181	May 5, 2025
Almost all Reads are unclassified - custom 18S V4 classifier Technical Support taxonomy , rescript , feature-classifier	12	273	April 25, 2025
Contents of imported database General Discussion taxonomy , rescript	6	123	March 18, 2025
Assigning Taxonomy with the Silva Classifier Technical Support rescript	5	326	March 5, 2025
Filtering eukaryotes from SILVA database User Support rescript , taxonomy	3	186	January 17, 2025
RESCRIPT: species information in GTDB User Support rescript	4	121	January 13, 2025
How to train a GTDB SSU classifier using RESCRIPt Community Contributions tutorial , ssu , taxonomy , feature-classifier , rescript , gtdb	2	2705	July 23, 2024
How to train a UNITE classifier using RESCRIPt Tutorials tutorial , taxonomy , its , feature-classifier , rescript , unite	8	2474	January 3, 2025
Merging Custom Reference Sequences with rescript reference database Technical Support rescript , import , feature-classifier	1	94	December 11, 2024
...temporary files that no longer exist. Technical Support rescript	2	89	December 3, 2024
Using RESCRIPt to compile sequence databases and taxonomy classifiers from NCBI Genbank Tutorials taxonomy , rescript	0	15560	August 4, 2020
Training silva classifiers based on NCBI taxonomy General Discussion feature-classifier , rescript	1	341	October 3, 2024
RESCRIPt issue for --p-query retriving data from NCBI: No sequences for given query Library Support rescript	4	126	October 2, 2024
Sequences not retrieved via Rescript Technical Support rescript	2	101	September 9, 2024
Manually Adding Positive Controls to classifier or reference database General Discussion taxonomy , feature-table , rescript	4	576	August 30, 2024
qiime feature-classifier classify-sklearn low confidence despite 100% identity User Support rescript , taxonomy , feature-classifier	1	179	August 21, 2024