Hi guys, I am new to the qiime2R package and need your help.
I run the qza_to_phyloseq with the script:
phyFP <- qza_to_phyloseq("C:/Users/thism/OneDrive - Saint Louis University/Forest park S2025/Bacteria_table.qza", "C:/Users/thism/OneDrive - Saint Louis University/Forest park S2025/Bacteria_rooted-tree.qza", "C:/Users/thism/OneDrive - Saint Louis University/Forest park S2025/Bacteria_taxonomy.qza", "C:/Users/thism/OneDrive - Saint Louis University/Forest park S2025/Forest_park_metadata.txt").
However, I had the error of "otu_table slot is empty". How can I fix this error? Thank you so much!